Gene detail

Gene detail information of Glyur000166s00010580

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G16970.1	KU70 homolog
NR	XP_006606601.1	PREDICTED: ATP-dependent DNA helicase 2 subunit KU70-like [Glycine max]
Swissprot	tr\|Q9FQ08\|KU70_ARATH	ATP-dependent DNA helicase 2 subunit KU70
trEMBL	tr\|K7N5J8\|K7N5J8_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G39280.2}

Sequence

Transcript Sequence

>Glyur000166s00010580.1
AAACTTTTTGAGTTTTGAGTGAGGAAGTAGCAGAAGAAGAGTTGGTTTGGGCGCGCACTGTCTAGTCTGTCTAGCAGTAGAAAGAAGGAAAGAAGAAAGAGGGTTTGTTTGTTTGGAATTGGAACTGTGACCAGTGAGAGTGAGAGAGAGAGAGAGAGAGAGATGGATTATGATGACGCTGATGATATCTTCAGAGACGATGAAGACGACCTTGATGCTGCTCGTCACCCCTCTCTGGAAAATGAGTCAAGCAAAGAATACGTGGTTTACCTGGTCGATGCTTCCCCCAAAATGTTCAACACTACTTGCCATGCGGAAGATCAAAGGGATGAAACTCACTTCCACATTGCACTCAGTTGTATCTCTCACTCACTCAAGTCTCAGATCATTAACAGATCCTATGACCAAGTTGCCATATGCTTCTTTAACACTAGGGAGAGGAAGAATTTACAAGACTTAAATGGTGTTTATGTATTTAATGTTGCTGAAAGAGAGTTTCTAGACAGGCCAACAGCAAGGCTCATAAAAGAATTTGATCATCTGGAAGAATCTTTTTCAAAAAACATTGGAAGCCAGCATGGTGTTATGTCTGGGAATCGAGAAAATCCTCTCTACAATGCTATCTGGGTGGCACAGGCACTTCTTCGTAAAGGGTCAGCAAAGACAGTTGATAAACGAATACTTTTGTTCACAAATGAAGATGATCCTTTTGGATGTGTCAAAGGGGCTATAAAATCCGATATGACAAGAATGACACTGCAGAGAGCTAAAGATGCACAGGATCTTGGCATCTCAATTGAACTCCTTCCCTTGAGTTGCCCTGATGAAACGTTCAACGTATCTAAATTCTATGTTGATTTGATTGGATTGGAAGGAGATGATCTTGTTAACTTTATGGCATCAACAGGAAATAAATTGGAGGATATGAAAGATCAGTTAAGAAAGCGCATGTTTATGAAACGCATTGTCAAGAAACTTAAATTCACAATAGTTAATGGGCTATCGATAGAACTAAATTCATATGCTTTAATTCGTCCCACCATTCCTGGAGCAATCACATGGCTTGATTCCATTACTAATCGTCCTTTGAAGAGTGAAAGAGCTTTCATTTGTGCTGATACTGGTGCATTGGTGGAAGAATCTACCAGACGGTTTCAACCTTATAAAAATCAGAATATTACATTTTCAATGAAGGAGCTATCTGAAATTAAAAGAGTTTCTACTGGACATCTACAACTTTTAGGCTTCAAGCCACTAAGTTGCTTGAGAGATTATTACAACTTGAAGCCATCAACTTTCCTTTATCCCAGCGATGAGGGAACAGATGGTAGCATGTGTATCTTCATTGCCCTTCATAGGTCCATGATACAGCTCAATCGTTTTGCAGTTGCATTTAGTGGTAGTTCATCTCGACCTCAATTGGTTGCCCTTATTGCGCAGGATGAGATCATCAAATCAGGTTGTCAGGTTGAGCCGCCTGGAATGCACATGATTTATCTTCCATATTCTGATGACATCAGACTTGTTGAAGAGCGTTATTCAGATACTAGAGGGATGGTAATTAAAGCAAGTGATGATCAAATAAAAAAGGCAGCTGATTTAATTAAGCGTATTGACTTGAAAGATTTTTCTGTATTCCAGTTTACCAACCCTGTAAGCTTCATATTGGAGTCCTTTATCAGTCTTAATGCATTAGCTCTGGAAGAAGATGAGATTCCAGAAATGAAAGATGAAACATTACCTGATGAGGAAGGCTTGGCCAGGACAGGAGTGGTAAGGGCATTAGAAGAATTCAAGAACTCTGTATATGGGGAAAATTATGATGAGGAAAATGAGAATGGCATTNGGAAGCCAACTGAAGCATCCAAGAAACGGAAAGCACATGCTGAGTTTGCAGTAAAAGAATGTGAGAACTATGACTGGGGTGAGCTCGCTGATACTGGAAAGTTAAAGGATTTGACTGTGGTGGAGTTAAAATATTATCTCACAGCACATAATCTTCCTGTTTCTGGGAAGAAGGAGGCTCTAATTAGCCGAATATTAACTCACATGGGAAAATGAGCAAGCGGGGGCGAATGTTTTCATTAATGATTTTGCAACCTCGATAACTAGAATGTCCAAGACCCAAGTACTTACAAGATCTTTGGAAATTAATTTTTGAGTACATTGATTGTTCTTGACCCGATGTTGGATCAGATACTGATTTGTACTTATATAAGTTAATCAGCATGGCAGGAGGGAAGATATTACTATTATACACGTAATGCGTGTTGAACCACACACAGACAGAGAGCAATACTAGAGAGTGGTGGTGGGATTTATTCATGACGTGGTACTGGTGGGAGTGGGACTCCTATTCCATAATAGAGGAGTATAAAAAGAAGTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00166	145879	156028	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000723 telomere maintenance

GO:0006303 double-strand break repair via nonhomologous end joining

cellular_component

GO:0005634 nucleus

GO:0043564 Ku70:Ku80 complex

molecular_function

GO:0003677 DNA binding

GO:0003684 damaged DNA binding

GO:0004003 ATP-dependent DNA helicase activity

GO:0042162 telomeric DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000166s00010580.1	PF03731.10	Ku_N	33	268	2.20E-53
Glyur000166s00010580.1	PF02735.11	Ku	276	457	9.30E-37
Glyur000166s00010580.1	PF03730.9	Ku_C	488	567	5.50E-05
Glyur000166s00010580.1	PF02037.22	SAP	596	629	2.80E-08
Glyur000166s00010580.2	PF03731.10	Ku_N	33	268	2.20E-53
Glyur000166s00010580.2	PF02735.11	Ku	276	457	9.20E-37
Glyur000166s00010580.2	PF03730.9	Ku_C	487	565	7.40E-14
Glyur000166s00010580.2	PF02037.22	SAP	594	627	2.80E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.702
SRR1783600	control	7.547
SRR1783602	moderate drought stress	6.954
SRR1811619	moderate drought stress	6.924

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.998
DRR006520	Root Summer glycyrrhizin high producing strain	9.678
DRR006521	Root Winter glycyrrhizin high producing strain	4.889
DRR006522	Root Winter glycyrrhizin high producing strain	4.848
DRR006523	Root Summer glycyrrhizin low producing strain	11.790
DRR006524	Root Summer glycyrrhizin low producing strain	11.675
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.837
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.795

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.811
SRR2868004	Drought Stress (root)	15.943
SRR2967015	Control (root)	14.701

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.645
SRR9715740	Leaf	7.918
SRR9715741	Leaf	6.314
SRR9715739	Root	0.750
SRR9715742	Root	4.479
SRR9715743	Root	3.973

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.002
SRR8749028	MeJA induced 9h	26.707
SRR8749029	MeJA induced 9h	18.598
SRR8749030	Uninduced	12.127
SRR8749031	Uninduced	7.983
SRR8749032	Uninduced	7.762

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.303
SRR8400027	Control - Root	20.834