Gene detail

Gene detail information of Glyur000166s00010579

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G31660.1	ARM repeat superfamily protein
NR	XP_003531917.1	PREDICTED: probable importin-7 homolog [Glycine max]
Swissprot	tr\|F4IRR2\|SAD2_ARATH	Importin beta-like SAD2 {ECO:0000305}
trEMBL	tr\|I1KWS2\|I1KWS2_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G29030.1}

Sequence

Transcript Sequence

>Glyur000166s00010579.1
AGCGAGCGGATCAACTGTCGAAGTGCGCGTCTACAGAGTGTCACTCTCTAAAGTAAACCCTACTCACGAAGCAGCAAAGAGTGAGAGTGAGAGTGGGAGAATCAGCAGGCAAGCATCGTGCTTTGATGGATCATCTGGGTGTTATACTGCAAGGTGCTCTCAGTCCCAATCCCGATGAACGCAAGGCCGCTGAGCAGAGCTTGGATCAGATCCAATACGCCCCTCAGCATCTGGTGAGGCTGCTACAAATCATTGTCGACACCAACTCCGACATGGCCGTCCGCCAAGTTGCCGCCATTCATTTCAAAAACTTCATTGCCAAGAATTGGTCTCCTCATCAGTCTGCTGCTGATGCTGATACCCAGCAGCACAAGATCTCACACGCCGATAAAGACCTCGTCAGGGATCACATTCTCCTCTTTCTACCCCAAGTTCCCCCTTTGTTGAGGGTACAACTTGGTGAGTGCCTCAAAACAATTATACATTCTGATTATCCCCACCAGTGTCCCCATCTTCTTGACTGGATCAAGCATAATTTACAGGACCAACAAGTCTATGCTGCACTTTTCGTGCTGCGGATTCTTTCTAGTAAATATGAATTCAAATCAGATGAGGACAGGACTCCGGTGCATCACATTGTTGAGGAGACATTTCCTCACCTTCTCAATATATTTAACAGGCTTGTCCAGATTGCTAATCCATCACTGGAAGTAGCGGATTTGATCAAGCTTATCTGTAAAATATTCTGGTCCTCCATATATCTGGAGATTCCAAAGCTTTTGTTTGATCAAAATGTATTCAATGCTTGGATGGTGCTGTTTTTAAATGTATTGGAGAGGCCTGTTCCTTTGGAAGGTCAGCCTGTTGATCCCGATCTTCGGAAATCATGGGGTTGGTGGAAGGTCAAAAAATGGACAGTTCACATTCTAAATAGGCTCTACACTCGTTTTGGTGATTTGAAGCTGCAAAACCTGGAAAACAGAGCCTTTGCTCAAATGTTTCAGAAGCATTATGCAGGGAAGATTTTGGACTGCCACTTAAATCTGTTGAATGTCATTCGAGTTGGTGGCTATTTACCTGACAGAGTCATCAACCTGGTTCTTCAATATCTAAGCAACAGTATTTCAAAGAATAGCATGTATACTGTGCTGCAACCTCGGCTTGATGTTCTTCTCTTTGAAATAGTTTTCCCTCTTATTTGCTTTAATGATAATGATCAAAAGCTTTGGGATGAAGATCCACATGAATATGTAAGAAAAGGCTATGACATTATTGAAGACTTGTATAGTCCTAGGACTGCCTCCATAGATTTTGTCAGCGAGTTGGTTCGAAAACGTGGGAAAGATAATCTTCACAAGTTTATTCAATTCATAGTTGAGATTTTTAAAAGGTATGATGAATCACCGGCAGAATACAAGCCCTATAGACAGAAGGACGGCGCTCTTCTTGCTATTGGGGCACTTTGTGACAAATTGAAACAAACTGAGCCTTACAAATCTGAACTTGAGCGTATGTTAGTGCAACATGTCTTTCCTGAGTTCAGCAGTCCTGTTGGCCATCTTAGGGCCAAGGCAGCATGGGTTGCAGGACAATATGCCCACATTAGCTTCTCAGATCAGGACAATTTCCGGAGGGCATTGCAATGTGTTGTATGTGGAATGCGAGATCCTGAACTTCCTGTCCGCATTGATTCTGTTTTTGCTTTGCGTTCTTTCGTTGAAGCTTGCAAAGATTTAAATGAAATTCGTCCTATTCTCCCTCAACTCCTTGATGAGTTCTTCAAACTTATGAACGAGATTGAGAATGAAGACCTTGTATTTACTTTGGAGACTATTGTGGACAAGTTTGGGGAAGAAATGGCACCGTATGCGCTTGGGCTGTGCCAACATCTGGCTGCTGCATTTTGGAGGTGTATGAACACTGCTGAAGCTGATGATGAAGCCGATGATCCAGGTGCTCTGGCTGCAGTTGGTTGTTTGCGTGCTATTAGCACAATACTTGAATCAGTGAGCAGTCTTCCTCAACNTTTTGTTCAAATTGAGCCTACTTTGCTTCCCATAATGCGTAGCATGTTAACAACCGATGGTCAAGAGGTATATGAAGAAATTCTGGAGATTGTATCATATATGACTTTTTTCTCTCCAACAATATCATTGGACATGTGGAGTCTTTGGCCATTGCTGATGGAAGCACTAGCAGATTGGGCTATTGATTTCTTTCCAAATATTTTGGTTCCTTTGGACAATTATATTTCAAGGGGAACTGCCCATTTCCTTACTTGCAAAGAACCTGATTATCAACAGAGTCTATGGAATATGATTTCCTCTATTTTGGCAGACAAAAATATGGAGGACAATGATATTGAGCCAGCTCCGAAGCTTATTGGAGCTGTCTTCCTGAACTGCAGAGGGCAGGTGGATCACTGGGTTGAGCCATATCTCAGAATCACAGTTGAACGCTTGCATCGAACTGAAAAATCATATTTGAAATGTCTTCTTATGCAAGTGATTGCAGATGCTCTATACTACAATGCAGCACTGACTTTCAGCATATTGCAAAAGTTAGGTGTTGCATCAGAAATATTTAATCTTTGGTTTCACATGCTGCAAGAAGTCAGGAAGAGTGGTATGCGTGCTAATTTTAAAAGGGAATATGACAAGAAAGTTTGCTGCCTTGGTTTAACATCCTTACTGGCACTTCCAGCTGATCAATTGCCAGGAGAGGCTTTAGGCCGGGTGTTCCGTGCCACTCTTGATCTTCTGGTTGCATACAAGGATCAAGTTGCAGAAGCTGGAAAAGAAGAAGAAGCTGAAGATGATGATGATATGGATGGCTTTCAAACTGATGAAGATGAGGATGACAATGGTTCTGACAGGGAAATGGGAATTGATGCTGAAGATGCTGAAGATGGGGATGAAGCTGACAGTAGTCAACTTAGAACGTTGGCCGAACAGGTAAAGTCATTCAGGCCCAACAATGAGGACGNTGATGACTCGGATGACGACTTTAGTGATGATGAAGAGTTGCAGTCCCCCATCGATGGGGTGGATCCTTTTGTTTTCTTTGTGGATACGATGAAAGTGATGCAATCATTGGATCCACTGAGGTTTCAGAACCTGACCCAGACACTTGAGTTTTCTTATCAAGCTCTTGCAAACGGTGTTGCCCATCATGCTGAGCTGAGAAGAGGTGAGATTGAGAAGGAAAAATTAGAGAAGTCATCGGCTACCACAGATTCTTGAGCTTTTGGATGTACATTCTTGGTTCTTGTTTTGCTGTTATGTTATCGAGCTTCTGCCCTTACGCCCATTCTTGGTAAGAGATGCAGAGGGTTTGCATATTTAATTGAGGCATTTATTGGCTCAATGTTCCTAGTTGGTGCGCTCACTGCGCTGTGATGAAGTTCACATTGACTTGAGAGGATGTTGGATTCATGAAACTGTGAAGTTTGGTGCTTCAGTGTCCATTCTTGCCCCCGTTCCTTTTCACCTTTCAAGTCTCCATGTTAGTTTCGTTGTTTCCAACATATGGAAACCCTTGTCTGTGCCTTTAGTGCAGCAATGGCTTCATGTGCGTGCGAGTTCTGTGATGTTCCTCTCCTGTCACATAGACGGGTAAACTGGGGCTGCCAATGGTTGCTATTGGTAATTTTTGTTGCGAGATAGTATTGAAAATTCTTTGTAATTTTAACCTTTTTTTGGTTATAATTTTTTTTTNGGGTTGAGAGTAGTATAAATCCACTGCGTATTGAGGCTTGCN

Protein Sequence

>Glyur000166s00010579.1
MDHLGVILQGALSPNPDERKAAEQSLDQIQYAPQHLVRLLQIIVDTNSDMAVRQVAAIHFKNFIAKNWSPHQSAADADTQQHKISHADKDLVRDHILLFLPQVPPLLRVQLGECLKTIIHSDYPHQCPHLLDWIKHNLQDQQVYAALFVLRILSSKYEFKSDEDRTPVHHIVEETFPHLLNIFNRLVQIANPSLEVADLIKLICKIFWSSIYLEIPKLLFDQNVFNAWMVLFLNVLERPVPLEGQPVDPDLRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNLENRAFAQMFQKHYAGKILDCHLNLLNVIRVGGYLPDRVINLVLQYLSNSISKNSMYTVLQPRLDVLLFEIVFPLICFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASIDFVSELVRKRGKDNLHKFIQFIVEIFKRYDESPAEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHISFSDQDNFRRALQCVVCGMRDPELPVRIDSVFALRSFVEACKDLNEIRPILPQLLDEFFKLMNEIENEDLVFTLETIVDKFGEEMAPYALGLCQHLAAAFWRCMNTAEADDEADDPGALAAVGCLRAISTILESVSSLPQXFVQIEPTLLPIMRSMLTTDGQEVYEEILEIVSYMTFFSPTISLDMWSLWPLLMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWNMISSILADKNMEDNDIEPAPKLIGAVFLNCRGQVDHWVEPYLRITVERLHRTEKSYLKCLLMQVIADALYYNAALTFSILQKLGVASEIFNLWFHMLQEVRKSGMRANFKREYDKKVCCLGLTSLLALPADQLPGEALGRVFRATLDLLVAYKDQVAEAGKEEEAEDDDDMDGFQTDEDEDDNGSDREMGIDAEDAEDGDEADSSQLRTLAEQVKSFRPNNEDXDDSDDDFSDDEELQSPIDGVDPFVFFVDTMKVMQSLDPLRFQNLTQTLEFSYQALANGVAHHAELRRGEIEKEKLEKSSATTDS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00166	135097	144513	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006886 intracellular protein transport

molecular_function

GO:0005488 binding

GO:0008536 Ran GTPase binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000166s00010579.1	PF03810.14	IBN_N	22	99	5.70E-20
Glyur000166s00010579.1	PF08506.5	Cse1	156	453	1.00E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.858
SRR1783600	control	30.122
SRR1783602	moderate drought stress	28.441
SRR1811619	moderate drought stress	28.532

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.379
DRR006520	Root Summer glycyrrhizin high producing strain	33.047
DRR006521	Root Winter glycyrrhizin high producing strain	8.391
DRR006522	Root Winter glycyrrhizin high producing strain	8.206
DRR006523	Root Summer glycyrrhizin low producing strain	28.590
DRR006524	Root Summer glycyrrhizin low producing strain	28.651
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.818
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.888

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.335
SRR2868004	Drought Stress (root)	23.284
SRR2967015	Control (root)	24.561

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.708
SRR9715740	Leaf	6.493
SRR9715741	Leaf	7.881
SRR9715739	Root	17.946
SRR9715742	Root	32.443
SRR9715743	Root	30.682

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.051
SRR8749028	MeJA induced 9h	10.979
SRR8749029	MeJA induced 9h	6.098
SRR8749030	Uninduced	1.836
SRR8749031	Uninduced	0.392
SRR8749032	Uninduced	0.559

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.019
SRR8400027	Control - Root	33.652