Gene detail

Gene detail information of Glyur000166s00010576

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G43080.1	2.00E-99	P4H isoform 1
NR	XP_006588447.1	9.20E-157	PREDICTED: uncharacterized protein LOC100794585 isoform X1 [Glycine max]
COG	YP_001791681.1	6.00E-26	procollagen-proline dioxygenase [Leptothrix cholodnii SP-6]
Swissprot	tr\|Q9ZW86\|P4H1_ARATH	9.00E-124	Prolyl 4-hydroxylase 1 (Precursor)
trEMBL	tr\|I1LFK7\|I1LFK7_SOYBN	3.00E-157	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G44480.1}

Sequence

Transcript Sequence

>Glyur000166s00010576.1
AGAACATGAAATTGTGACGGGAAGCAAATCAGAGCACAAAACGCAACAAAAACAAGGGGCGCGTTAGAGAGAGTGAAGAAGGTGCGACTGCGAGGGAGGGACAGACACAGTTTCATTCCAATTTGACATTTGACCCATTGACTGACTTCTCTGTTTCGGTGTGNGTGGTCTTCTCCTTTCCATGGCGCCGGCGATGAGGCTCGTTTTCGGACTTCTCACATTCGTCACCGTCGGAATGATCATCGGTGCTCTCTCTCAATTGGCATTCATACGGAAGTTGGAAGACTCATACGGTACCGAGTCTCTACCATTTAGAAGACTGCGTGGACTAGAGAGTAATGGTTACCTTCAGTTGCCCAGAGGTATTCCATATTGGAATAATGACAAGGAAGCAGAAAGCTTACGCCTTGGATATATCAAACCTGAAGTGCTTAGCTGGTCTCCACGAATTATTTTACTGCATAACTTCCTGAGCTTGGAGGAATGTGATTACCTNAGGGCATTAGCCCTCCCTCGCCTGCAAATTTCGACAGTGGTGGATACAAAAACCGGAAAGGCAATTGAAAAAAGAATTTCTGTCTATTCTCAAGTACCGATCGAAAATGGGGAGCTTATGCAAGTCCTGAGTATCGACGCTAACATCTACAGCAGCACAGGTATGAGAAGAATCAGTATTACAAACCCCATCATGACTATTTTTCTGACACTACAGTTCAACTTGAAGCGTGGTGGGCAGCGAATAGCTACAATGCTTATGTATTTAAGTGACAATGTTGAGGGAGGAGAAACATATTTCCCATTGGCTGGTTCAGGTGAATGTAGCTGTGGTGGGAAATTTGTCAAAGGGCTATGTGTGAAACCAATTAAAGGAAATGCAGTGCTTTTCTGGAGTATGGGACTGGATGGACAGTCAGATCCGCATAGTGTGCATGGAGGATGTGAGGTACTCGCTGGGGAGAAGTGGTCAGCTACAAAGTGGATGAGGCAGACAGCTCACTCATGATTTAGCTACCTTTCACCATCTCGCGCAGTGAATGACTACCAAAAAAACAAAATCACTAGAGGGATTCCCCCTTCACATTTTCCTTTGAAAAATAGTGATTATGATTAGTGATTGGTAATATAAAGATAGCGTAGCTGTGAGCTTTGATCAATAAAGTATAGCATAATCTGATTTAGTAGAAACACCGGGGGATGATTTTATCTATATATCATTTTATACACCATGTGGACATTTTGTCGGCATTGTCATTGGTCTTGGTACCCATTTCTGATTAAGTTGAAATATTTGTAAAATGGATGAANTCTTCTAGCCCGGGTATATTCTTACACGTGTATATCTGAGTTTCAGAAATACTAAATTGGAGGCAAAATCATCATNCGTATACATTTGTTTTAGGACTCTGAGATCGAATATCATTGGAAGCAGTTGCCAACGACAATCCCCTTTCCCAATTGACATCTGTCACGTGATTGATACGAACGGAATGAACATTTTTTCCACATTCGACTTTAACTCAAGATGAAAACTCCATGACCATTCCATGTTGAAGATGTTTCTAAAGAACAGGAAGTCCTTTGCCTTTTAAACGGACAGCCAGCTGGTATGGACCATAGAGACACATACGCAGATCACCCTGGATCATCGNTTGATAAAAATAATTCTTGAACAGATCCCAGAACTCATCCCTGCCAGTCAGTTATATCATGTAACATCATCAATAAGGTTAGAAATATGTACGCGCTTTTGCTAAGTAGTAATAAAAATACTTTTTCCATGGAGACTCCATTGATAACTATCAATTACATTACGGTATATGATCATGCAAATATGAGGCCTTACAGATTTGCATTGCATGCATGAAACTCACCAAAAATTTAACACTAATAAGAGGTCAAGGAACAATCAAAATTTCATCATCAATATGNCATCCAGCTACGCCCTATCCTAGAATGAAGAAAACTACTCAGCCATGTTAAGAGAATAATCCAAACATCAAATCAATAAAAACAAGGAGTAGAAAAGAGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00166	116620	123759	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00472	P4HA	EC:1.14.11.2	Arginine and proline metabolism	map00330

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

GO:0031418 L-ascorbic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000166s00010576.1	PF03171.15	2OG-FeII_Oxy	185	268	4.80E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.884
SRR1783600	control	11.994
SRR1783602	moderate drought stress	8.466
SRR1811619	moderate drought stress	8.361

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.704
DRR006520	Root Summer glycyrrhizin high producing strain	16.952
DRR006521	Root Winter glycyrrhizin high producing strain	23.943
DRR006522	Root Winter glycyrrhizin high producing strain	23.297
DRR006523	Root Summer glycyrrhizin low producing strain	18.668
DRR006524	Root Summer glycyrrhizin low producing strain	18.465
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.790
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.903

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.611
SRR2868004	Drought Stress (root)	16.409
SRR2967015	Control (root)	15.304

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.458
SRR9715740	Leaf	9.745
SRR9715741	Leaf	12.000
SRR9715739	Root	4.329
SRR9715742	Root	10.022
SRR9715743	Root	8.501

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.465
SRR8749028	MeJA induced 9h	34.997
SRR8749029	MeJA induced 9h	35.718
SRR8749030	Uninduced	53.360
SRR8749031	Uninduced	59.631
SRR8749032	Uninduced	70.426

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.717
SRR8400027	Control - Root	14.396