Gene detail

Gene detail information of Glyur000166s00010574.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16740.1	7.00E-122	terpene synthase 03
NR	Q6EJ97.1	0	RecName: Full=Isoprene synthase, chloroplastic; Flags: Precursor [Pueraria montana var. lobata]
Swissprot	tr\|Q6EJ97\|ISPS_PUEML	0	Isoprene synthase, chloroplastic (Precursor)
trEMBL	tr\|H2CSU7\|H2CSU7_9FABA	0	Isoprene synthase {ECO:0000313\|EMBL:AEK70969.1} (Fragment)

Sequence

Transcript Sequence

>Glyur000166s00010574.1
CAGCCCCTCATCTCCAATATAAAAGAGGAGGACATACATGTGCATCGCAATTCAATTCAACCAATTAGACAAGCTAGCTAGAGAACACTATATATATAGCTGCCTAGTGTGTTACTTAGAGATCATATATAGAGTTTCAGTGGCATATTAATTAATTATTCACACTACAAGATCATGGCAACTGACCTCTTGTGCTTGTCTAGCCAATTCTCGTCCACCACCACCCCAACACTACTAACTACTAGTAGAAGTAATTATAGGATTAACTCCGCGCAAAAAGCATCATTTCTGGCCAATCCCAAACCTTGGCGAGTCACTTGTGCAGTGGGCACACAGCATAGTACCCAAGTAACAACACAAGATACTAGACGTTCAGCCAATTACCAGCCAAACCTCTGGAACTTTGAGTTTCTGCAGTCCCAGGGAAATGACCTTCAGGTGGAAATACTAGAAGAGAGAGCAGGAAAGCTGGAGGAGGAGGTGCGGGGCCTGATTGACACGACAACGGAGCCACTAAGCTTACTGGAAGTGATTGACAAGGTGCATCGCTTTGGATTGACCTACAAGTTCCAACATGACATAAACAAAGCCCTCCACAGGATTAATGTTAATTCGTCGGATATATATCAGGGCGCCGAGATTGAGAAAAGTGGGTCGACATTGCATGCTACTGCTCTCGCCTTCCGTCTGCTTAGGCAACATGGCTTTGAGGTCTCTCAAGATGTGTTTGAGAGTTTTAAGGAGAAAGATGGAAGCTTCAGCGATGCAGTTAAAGGCGATGCACAGGGATTGCTGAGTCTGTACGAAGCATCGTATCTGGGGTTTGAGGGAGAACACGTGCTGGATGAGGCAAGGGAGTTTTCAACAACACATCTCAAGAATATTGTTGTTAACAGTATTAACCTGCAGCAGAATTATAAAGAAGGAGGAGGAGTGCCTGTGGTGAGCAGCAGCAAAATGGCTGCAGAACAAATTANTGATGCGCTGGAACTCCCCTATCACCGAAGAGTGCACAGACTGGAAGCAAGACGNTTCATCGATAAATACCAAATAAAGGATCCCCACGTCGACGGTTTACTACTTGAGCTTGCAAAGTTGGATTTCAATACGGTGCAATTGTTGCAGCAGAAAGAACTACGAGATCTCTCAAAGTGGTGGAAGGAGATTGGTCTGGCAAGCAAGTTGGAGTTTGTGCGAGACAGGTTAATGGAGGTATACTTTTGGGCGGCGGGAATGGCCCCCGATCCCCAATTAAGCGAATGCCGCAAAGCCGTCACCAAAATGTTCGGATTGGTCACCATCATCGATGATGTTTATGATGTCTACGGTACTTTGGACGAGCTACAACTCTTCACGGATGCCGTCCAGAGGTGGGATGTGAATGCCGTAGACACACTTCCAGACTACATGAAGTTGTGCTTCTTGGCCCTCTACAATACGGTTAACGACACCGCGTACAGCGTGCTTAAGGAAANAGGGCATAACAACCTTCCCTATCTTGCAAAATCTTGGTGTGAGCTGTGCAAAGCATTTATGCAAGAAGCAAGGTGGTCGAACAACAAAATAATTCCGGAATTCAAGGAGTACCTGGACAATGCATCCGTTTCCTCCTCCGGCGGGGCTTTACTCACTCCTTGCTACTTCTCCCTCTGTACCCAAAACGACGACGCAAGCCAATCACCTGCAGCTCTGGATTCTTTGACCAATTTCCAGGGCCTCGTCCGCTCCTCCTGTGCCATTTTCAGATTGTGCAATGATCTCGCCACCTCAACGGCTGAGCTGGAGCGGGGTGAAACGACGAATGCAATCGCGTCGTACATGAAGGAGAAGGGGGTGGGTGAGGAGCGAGCGCGTGAGGAGCTGGGAAAGTTGATCGACGCGGAGTGGAAGAAGATGAACGGAGATGGGACGGTGTTCCCAAAGGCATTCAAAGAGACGGCCATCAACATGGCGCGTGTGTCCCATTGCACCTACCAATACGGAGACGGACTCGGAAGGCCCGACGACACGGCCGAGAACAGAATCAAGCTGCTCCTCATTGACCCCATCCCTATTCATTACGAGCGAGCCAACTGGAGTGGAGTGACTAGCCAAGAACAAGAACAAGAACAAGAACGAACAAGAATGGGGAGCGAGAAGAAGTTAAAGCGAAAAGGAAGTGAAAATCGAGATAATAAAGATGATAGAAGGAAAAAGAAAAGGAAGACGCCATCATCGTTATCGAATGAGAATAAAAAGGAAGGAGAAGGAGCTGCGGAGCAATTGCGTTTCTTTGTGGACCAATTTCAGGCGGCCAAGGGTTTTCAACTTTCTTCCCTCGAGTTGGAATCCCTCAAAGATACATGCATTTTGGAGCTGCCATCATCAGACTCGGATGTGAAGATGTTGGGGAAAAGCGTGAAAGCAGCTTTTGGGGCATCGTGGAAGGAGGTTCTCTGTGAAGGGCANCTCGNCGATACCCCTCCCGGGAGCCCCGCTGTTCTCATCCTCAGTTCCTCTGCCTTGAGATCCACACACCTTCTCAGGGGCTTTCGCTCCATGACTCAAGAATGCCGCCCTGTCAAGTTGTTCTCAAAGCATATCAAACTCGAAGAACAGATTTCTTTGTTAAAAAACCGTGTTAACATTGCCAGCGGCACGCCAAGCAGGGTAAAGAAACTCATTGACATTGAGGCGTTAGGCCTTTCAAGGTTGCAAGTACTTCTGCTTGACATGCATCCTGATGTAAAGGGCTATTCCTTGTTTACCCTTCCACAAGTCAGGGATGAGTTCTGGGATCTGTTCAAGAATTATTTTTATCAANCGATGATCCAGGGTGATCTGCGTATGTGTCTCTATGGTCCATACCAGCTGGCTGTCCGTTTAAAAGGCAAAGGACTTCCTGTTCCTGATACATAATATGTGACGTTAATCATCCTTGTTTTGTTTCAGGCTTGTATTCTTGCAATTATTTTATTGCTATTCCAGTTATATCTCATTATTAAGTTTAAACTTACATTAAAATTAAAAATGTGTCCATTAAGTGAACAATTTGAAGCGTATCATGATTTTTAACTCACTTTAGAAACATCTTCAACATGGAATGGTCATGGAGTTTTCATCTTGAGTTAAAGTCGAATGTGGAAAAAATGTTCATTCCGTTCGTATCAATCACGTGACAGATGTCAATTGGGAAAGGGGATTGTCGTTGGCAACTGCTTCCAATGATATTCGATCTCAGAGTCCTAAAACAAATGTATACGNATGATGATTTTGCCTCCAATTTAGTATTTCTGAAACTCAGATATACACGTGTAAGAATATACCCGGGCTAGAAGANTTCATCCATTTTACAAATATTTCAACTTAATCAGAAATGGGTACCAAGACCAATGACAATGCCGACAAAATGTCCACATGGTGTATAAAATGATATATAGATAAAATCATCCCCCGGTGTTTCTACTAAATCAGATTATGCTATACTTTATTGATCAAAGCTCACAGCTACGCTATCTTTATATTACCAATCACTAATCATAATCACTATTTTTCAAAGGAAAATGTGAAGGGGGAATCCCTCTAGTGATTTTGTTTTTTTGGTAGTCATTCACTGCGCGAGATGGTGAAAGGTAGCTAAATCATGAGTGAGCTGTCTGCCTCATCCACTTTGTAGCTGACCACTTCTCCCCAGCGAGTACCTCACATCCTCCATGCACACTATGCGGATCTGACTGTCCATCCAGTCCCTGCGAAGACCAAGAAATATAAAAGGTTGACTATGCCTTGCCTTATTTGGTGAGACATATAAAAGGTTCGTTCTTAAAACGCATAGCACAAACAATAACTCTCCATGATTCAATACTCTTTTTTTGGGTTCATTACTCTGAACATTGACAGTGTATTAGGCAAGATGAATGATAATTAAGTGACCTAAAAATANGATTTTAAGTAAATACGAGTGTCGGCTGGTAAACCAGACTATTGATTGAATTAAGGAGGGTTATTTGGAGTTAAGTGAATTGATGGGTGCTAGGGTGAACCTAGAAAAATTGGATGTATTCTGAAATTCTTTAATTTCTTGCTATATACTTGTTGGTTACTCTTTGCTCCTTATACTCAGGTGCTTGGACAAGAATTTGCCTAGCGATTGGTTAATAGATAGCATTGTTTTTTTTTACTAATCTCTTGGAGAATGATATACTCAAACCCATGCACTTGCGGTAAGCCTGAGAAAAACATTTTCTATTTTGGGCTTAAAGGTACAATTTTAAAAGCATATACAAGTACTAGAGCGATTACGAAAATTGCTGCTGCTATTTCATAACCCTCATGAATGATGTCCTTAACAAGCAAAATTATACTAACCATACTCCAGAAAAGCACTGCATTTCCTTTAATTGGTTTCACACATAGCCCTTTGACAAATTTCCCACCACAGCTACATTCACCTGAACCAGCCTGAAATGCATTGCATATCATCAATAGCAGCCTTCGGTACACAGTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00166	108964	118684	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12742	ispS	EC:4.2.3.27	Terpenoid backbone biosynthesis	map00900

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function

GO:0000287 magnesium ion binding

GO:0010333 terpene synthase activity

GO:0016829 lyase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000166s00010574.1	PF01397.16	Terpene_synth	75	241	3.80E-48
Glyur000166s00010574.1	PF03936.11	Terpene_synth_C	302	575	1.70E-87
Glyur000166s00010574.1	PF14617.1	CMS1	646	888	6.20E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.116
SRR1783600	control	8.159
SRR1783602	moderate drought stress	5.927
SRR1811619	moderate drought stress	6.051

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.213
DRR006520	Root Summer glycyrrhizin high producing strain	8.158
DRR006521	Root Winter glycyrrhizin high producing strain	7.569
DRR006522	Root Winter glycyrrhizin high producing strain	7.163
DRR006523	Root Summer glycyrrhizin low producing strain	7.998
DRR006524	Root Summer glycyrrhizin low producing strain	8.044
DRR006525	Leaf Summer glycyrrhizin high producing strain	559.009
DRR006526	Leaf Summer glycyrrhizin high producing strain	558.471

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.381
SRR2868004	Drought Stress (root)	7.722
SRR2967015	Control (root)	6.650

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1069.090
SRR9715740	Leaf	1804.785
SRR9715741	Leaf	1065.455
SRR9715739	Root	2.493
SRR9715742	Root	6.528
SRR9715743	Root	5.779

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.494
SRR8749028	MeJA induced 9h	7.561
SRR8749029	MeJA induced 9h	8.314
SRR8749030	Uninduced	13.945
SRR8749031	Uninduced	16.950
SRR8749032	Uninduced	2.551

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.369
SRR8400027	Control - Root	10.695