Gene detail

Gene detail information of Glyur000166s00010568

Functional Annotation

Database	Orthologs	E value	Annotation
NR	XP_004498723.1	3.53E-80	PREDICTED: extensin-2-like [Cicer arietinum]
trEMBL	tr\|V7B9Q5\|V7B9Q5_PHAVU	3.00E-75	Uncharacterized protein {ECO:0000313\|EMBL:ESW14607.1}

Sequence

Transcript Sequence

>Glyur000166s00010568.1
ATGACTGCTGGGGGCAGTAACCCCAAACGGGGTCGCCTTTGGCCGCAAATGGCCATGGCATTGGCCATCGTTTTGATTTCTACTACTGTGGTTTCCGTTGCTGCTGATGTACAAGTCACCTCCGCCACCATCTCCTTCACCCCCACCTCCTTACGAGTACAAGTCACCACCTCCACCTCCTCCCCTCCACCGCCTTCTCCTTCACCCCCACCTCCTTATGAGTACAAATCACCACCTCCACCTCCGTATGAGCACAAGGCTCCACCTTATGAGTACAAGTCACCTCCACCGCCTTCTCCTTCACCCCCACCTCCTTATGAGTACAAGTCACCACCTCCACCTCCGTATGAGCACAAGGCTCCACCTTATGAGTACAAGTCACCACCTCCTCCTTCCCCATCCCCTCCACCTCCTTACGTGTACAAATCACCACCTCCTCCACCTCCATATGAGCACAAGGCACCACCATACTATTACAAGTCACCCCCACCACCCTCACCCTCCCCTCCCCCACCATACTATTACAAGTCTCCTCCACCACCATCTCCCTCACCTCCACCTCCTTACTACTACAAGTCACCACCCCCGCCATCACCTGTGCCTAAACCTCCCTATTACTACAAGTCTCCACCTCCACCATCACCTGTGCCCAAACCTCCGTACTACTATAAGTCACCACCCCCACCATCACCATCCCCTCCTCCACCATACTACTACAAATCTCCACCTCCACCATCACCTGTACCTAAACCTCCGTACTACTACAAGTCACCACCCCCGCCATCNCCTGTGCCTAAACCTCCCTATTACTACAAGTCTCCACCTCCACCATCACCTGTGCCTAAACCTCCGTACTACTATAAGTCACCACCCCCGCCATCCCCATCCCCTCCTCCACCATACTACTACAAGTCTCCACCTCCACCATCACCTGTACCTAAACCTCCGTACTACTACAAGTCTCCCCCACCACCCTCACCCTCACCTCCCCCACCTTACTATTACAAGTCTCCACCACCACCTTCACCCTCTCCTCCACCACCATACTATTACAAATCTCCGCCGCCACCTTCACCATCTCCTCCCTCAAAGTCTCCTCCTCCCCCTTCACCCACTCCACATCCACCTTACTACTACAATTCTCCCCCACCTCCGGTAAAATCTCCACCTCCACCAACACCTTACTACTATCAGTCTCCACCACCACCCAAGTACACACCACCTCCATACTACTATAATTCTCCTCCTCCACCTGTTGTGTATCCCCCACATCCCTACCACCATCCATTGATTGTGAAGGTAGTGGGTAAAGTCTACAGCTACAAATGCTATAACTGGAAGTATCCCGAAATGTCTCATGACAAGAAACACCTCAAAGGTGCTGTTGTGGAGGTCAAATGCAAAGCTGGGAGGAATATCATCAAGGCCTACGGTAAAACTAAGAGCAATGGAAAGTACAGCATCACACTTAAGGACTTCAACTATGTCAAATATGGTTCCAGAGTGTGCAAGGCCAAGCTTCATGCTCCACCTAAAGACTCTCCCTTCAACATACCTACCAAGCTCAACGAGGGAACCGACTTGAAGATAAAATCCAAAGACAAGTATGAAGTTGTGCTCAAGTCTAAGCCATTTGCTTATGCTTCGAAGAAGCATTTTGAAGAATGTGAGAAGCCTAAGCCTTCACCAACTCCTTACTACTACAAGTCACCTCCTCCTCCAGCACCAGTATACGTGTACAAGTCGCCACCTCCACCATCACCTACTTACGTGTACAAGTCACCACCTCCACCTGTCCATTATTATTCTCCTCCGTATTACTACAAGTCACCCCCTCCTCCAGTGAAATCACCAGCTCCTTATTATTACAAGTCTCCACCTCCACCATCACCTGTACCTAAACCTCCATACTACTACAAGTCACCTCCTCCTCCCACACCAGTTTATCTATACAAGTCACCACCTCCACCATCACCTACTTACGTGTACAAGTCTCCACCACCACCTGTCCATTATTATTCTCCTCCATACTACTATAAGTCACCACCCCCGCCATCACCATCCCCACCTCCACCATATTACTACAAATCTCCACCTCCACCATCACCTGTTCCTAAACCTCCCTACTACTATAAGTCTCCACCCCCACCATCACCATCCCCTCCTCCACCATACTACTACAAGTCTCCACCTCCACCATCACCTGTACCTAAACCTCCATACTACTACAACTCTCCACCTCCACCATCACCTGTTCCTAAACCTCCCTACTACTACAAGTCACCTCCTCCTCCCACACCAGTTTATCTATACAAGTCACCTCCTCCACCATCACCTACTTACGTGTACAAGTCTCCACCACCACCTGTCCATTATTATTCTCCTCCATACTACTACAAGTCACCACCCCCGCCATCACCATCTCCACCTCCACCATATTACTACAAATCTCCACCTCCACCATCACNTATTCCTAAACCTCCCTACTACTACAAGTCTCCACCTCCACCATCACCTGTACCTAAGCCTCCGTACTACTATAAGTCACCACCCCCACCATCACCATCCCCACCTCCACCATACTATTACAAGTCTCCACCTCCACCATCACCTGTACCTAAACCTCCATACTACTACAAGTCTCCACCTCCACCATCACCTGTGCCCAAACCTCCGTACTACTACAAGTCACCACCACCGCCATCACCATCCCCTCCTCCTCCATATTACTATAAGTCTCCACCTCCACCATCACCAGTGCCNAAACCTCCATACTACTACAAGTCTCCACCCCCACCATCACCATCCCCTCCTCCACCATACTACTACAAGTCTCCACCTCCACCATCACCGGTACCTAAACCTCCGTACTACTACAAGTCTCCTCCTCCACCATCACCCGTGCCTAAACCTCCATACTACTATAAGTCTCCACCCCCACCATCACCATCCCCTCCTCCACCATACTACTACAAGTCTCCACCTCCACCATCACCTGTACCTAAGCCTCCTCACCACCGCCGCCATCACCATCCCCTCCTCCTCCCATACTACTATAAGTCTCCACCTCCACCATCACCATCCCCCCCTCCACCTTACTATTATCATTCTCCTCCCCCACCTAAAGAATTACCACACCCTCCATACTATTATAAGTCACCACCTCCACCATCACCATCCCCTCTCCCTCCATACTATTACAAGTCTCCCCCACCACCGTCACCATCCCCACCTCCACCTTACTACTACAAGTCTCCGCCACCACCATCNCCATCTCCACCACCTCCCTACTACTACAAATCACCTCCACCACCATCCCCATCACCTCCGCCTCCATACTATTACAAGAGTCCCCCTCCACCGTCCCCCTCTCCTCTTCCTCCATACTACTACCAATCTCCACCACCACCATCGTCTTCTCCTCCACCTCCCTACNACTACAAATCACCACCACCACCATCCCCATCNCCACCACCTCCTTACTATTACAAGTCACCCCCACCTCCATCTCCATCTCCACCACCNCCTTATTACTATCAAAGTCCTCCTCCACCATCTCCCACTCCTCATCCTCCCTACTACTACAAATCCCCTCCACCACCAAAGGCGTCTCCTCCACCTCCTTACCATTACGTGAGTCCTCCCCCACCCACACAATCTCCTCCACCACCATACCATTACACATCACCACCTCCTCCCTCCCCATCTCCCGCTCCGACATATATTTACAAATCACCTCCTCCACCAGTGAATTCACCACCACCACCAGTTTACATTTATGCTTCCCCACCACCACCTATCTACAATTTTCATCAAGGAATAAAGGCAACCTCCATTTGGAGCAAAATGAAACATCTAGCTTCCCGTCCAAGTTCTTTGAATAAAAGTCTGAATGTATCATCTCTGAGCTACAATATTTGTGATTCAGACGAGTTTGACTCTGTTTCTTTGATGGTCATCTTGCACGTCCTAGTCTTATTGTGTTCAAGTGACAGACAGATCAAAATGGGGAAGCTAGATTTGAAATNTAAATGCCAAGTGAAAGTCAAAAGTACAATTAATATGGCCGTGTATGATTGTTTTTCTATTTATCGTGGCATTTTTGTATTGTATCCTGTTGTTGTGTTTGAAATAAGAGTGTTAATAACAAAGAAGCACATTCAANATCTGATTCTGTCCACAAATTAG

Protein Sequence

>Glyur000166s00010568.1
MTAGGSNPKRGRLWPQMAMALAIVLISTTVVSVAADVQVTSATISFTPTSLRVQVTTSTSSPPPPSPSPPPPYEYKSPPPPPYEHKAPPYEYKSPPPPSPSPPPPYEYKSPPPPPYEHKAPPYEYKSPPPPSPSPPPPYVYKSPPPPPPYEHKAPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPVPKPPYYYKSPPPPSPVPKPPYYYKSPPPPSPSPPPPYYYKSPPPPSPVPKPPYYYKSPPPPSPVPKPPYYYKSPPPPSPVPKPPYYYKSPPPPSPSPPPPYYYKSPPPPSPVPKPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPSKSPPPPSPTPHPPYYYNSPPPPVKSPPPPTPYYYQSPPPPKYTPPPYYYNSPPPPVVYPPHPYHHPLIVKVVGKVYSYKCYNWKYPEMSHDKKHLKGAVVEVKCKAGRNIIKAYGKTKSNGKYSITLKDFNYVKYGSRVCKAKLHAPPKDSPFNIPTKLNEGTDLKIKSKDKYEVVLKSKPFAYASKKHFEECEKPKPSPTPYYYKSPPPPAPVYVYKSPPPPSPTYVYKSPPPPVHYYSPPYYYKSPPPPVKSPAPYYYKSPPPPSPVPKPPYYYKSPPPPTPVYLYKSPPPPSPTYVYKSPPPPVHYYSPPYYYKSPPPPSPSPPPPYYYKSPPPPSPVPKPPYYYKSPPPPSPSPPPPYYYKSPPPPSPVPKPPYYYNSPPPPSPVPKPPYYYKSPPPPTPVYLYKSPPPPSPTYVYKSPPPPVHYYSPPYYYKSPPPPSPSPPPPYYYKSPPPPSXIPKPPYYYKSPPPPSPVPKPPYYYKSPPPPSPSPPPPYYYKSPPPPSPVPKPPYYYKSPPPPSPVPKPPYYYKSPPPPSPSPPPPYYYKSPPPPSPVPKPPYYYKSPPPPSPSPPPPYYYKSPPPPSPVPKPPYYYKSPPPPSPVPKPPYYYKSPPPPSPSPPPPYYYKSPPPPSPVPKPPHHRRHHHPLLLPYYYKSPPPPSPSPPPPYYYHSPPPPKELPHPPYYYKSPPPPSPSPLPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPLPPYYYQSPPPPSSSPPPPYXYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYQSPPPPSPTPHPPYYYKSPPPPKASPPPPYHYVSPPPPTQSPPPPYHYTSPPPPSPSPAPTYIYKSPPPPVNSPPPPVYIYASPPPPIYNFHQGIKATSIWSKMKHLASRPSSLNKSLNVSSLSYNICDSDEFDSVSLMVILHVLVLLCSSDRQIKMGKLDLKXKCQVKVKSTINMAVYDCFSIYRGIFVLYPVVVFEIRVLITKKHIQXLILSTN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00166	58110	64179	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000166s00010568.1	PF01190.12	Pollen_Ole_e_I	434	526	4.20E-12
Glyur000166s00010568.2	PF01190.12	Pollen_Ole_e_I	474	566	4.40E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2891.132
SRR1783600	control	2775.140
SRR1783602	moderate drought stress	2780.011
SRR1811619	moderate drought stress	2638.847

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	818.714
DRR006520	Root Summer glycyrrhizin high producing strain	816.866
DRR006521	Root Winter glycyrrhizin high producing strain	16.223
DRR006522	Root Winter glycyrrhizin high producing strain	16.491
DRR006523	Root Summer glycyrrhizin low producing strain	442.870
DRR006524	Root Summer glycyrrhizin low producing strain	450.075
DRR006525	Leaf Summer glycyrrhizin high producing strain	287.994
DRR006526	Leaf Summer glycyrrhizin high producing strain	278.535

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1618.309
SRR2868004	Drought Stress (root)	1571.036
SRR2967015	Control (root)	1250.314

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	210.768
SRR9715740	Leaf	33.951
SRR9715741	Leaf	100.729
SRR9715739	Root	482.522
SRR9715742	Root	1110.784
SRR9715743	Root	898.439

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	301.647
SRR8749028	MeJA induced 9h	654.928
SRR8749029	MeJA induced 9h	392.010
SRR8749030	Uninduced	697.389
SRR8749031	Uninduced	441.990
SRR8749032	Uninduced	631.238

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	630.866
SRR8400027	Control - Root	621.884