Gene detail

Gene detail information of Glyur000165s00008531.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38670.1	3.00E-140	phosphorylethanolamine cytidylyltransferase 1
NR	XP_003530503.1	0	PREDICTED: ethanolamine-phosphate cytidylyltransferase-like isoform X1 [Glycine max]
COG	YP_004672440.1	6.00E-26	hypothetical protein SNE_A20720 [Simkania negevensis Z]
Swissprot	tr\|Q9ZVI9\|PECT1_ARATH	0	Ethanolamine-phosphate cytidylyltransferase
trEMBL	tr\|I1KPR3\|I1KPR3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G03190.1}

Sequence

Transcript Sequence

>Glyur000165s00008531.1
TTTCATTCAGACGAAGGATTGTTGCAAAAACAAGGAAGAGCATTCCTGCGTAAGAATCCAAAAGGGAGAAAGAAGAGAGAGAAGAGAAGAGAGAGAGAGAGAGAGGGGACACAGACACAAAAGGAGAAACCCAAAATAAGGTCTGTGCCTCCTCTTATATAATTAGCTAGTTTCTGAGATCAAAAATAAAAAGGACGACATGGATTATGAAAGTAATAGTTGGATTTGGGAGGGGGTATACTACTACCCGCATGTGTTTGGGGGCCTAATGGTTACAGCAGCCTTGCTTGGCTTGTCAACCAGCTACTTTGGTGGGATTGGGGTTCATTTGCCACTGCCATGCTCCTTGTCTAATTTGGGGATTTTCCACAAGAAGAAAACTGGGAAGAGGCGCATTCGGGTTTACATGGATGGTTGTTTTGATCTGATGCATTATGGCCATGCCAATGCACTCAGACAGGCAAAAGCTCTAGGAGATGAATTGGTTGTAGGCCTTGTCAGTGATGAGGAGATTGTGGCCAATAAAGGGCCTCCCGTTTTGTCCATGGAGGAGAGGTTGGCCCTTGTCAGTGGATTGAAGTGGGTGGACGAGGTCATAACTGATGCTCCTTATGCAATTACTGACCAATTCTTGAACCGTCTCTTTCATGAATACAAAATTGACTATGTCATACATGGTGATGATCCTTGCCTGCTTCCAGATGGAACAGATGCTTATGCTGCAGCAAAGAAAGCTGGCCGTTACAAGCAAATTAAACGTACTGAAGGAGTTTCCAGTACGGATATCGTAGGAAGAATAATGTCTTCTTTAAAAGATCCAAAACTTTGTGAAGATCACAATGGTACCAATGTAAGACCTCAAGAAGAAAGCCAGCCAACGGTTTCTCACATATCCCAATTCCTACCAACTTCCAGACGTATTGTCCAGTTTTCAAATGGCAAGGGTCCTGGACCGAATGCTCATATTGTATACATTGATGGGGCATTTGATCTCTTCCATGCAGGGCATGTTGAGATACTCAAGAGGGCTAGGGAGCATGGAGATTTTCTTTTAGTTGGTATACACTCAGACGAGACAGTGAGTGAACATCGAGGAAATCACTATCCAATTATGCATCTTCACGAACGTAGCCTTAGTGTGCTAGCTTGCCGTTATGTTGATGAAGTCATTATTGGTGCACCTTGGGAAATTACAAAGGACATGATCACGACTTTCAATATCTCACTAGTTGTGCACGGTACTGTTGCNGAGAAGTCATTACAGAGTGAAATGGATCCATATGAGGTTCCAAAGAGCATGGGAATATTCCACTTGCTTGAAAGCCCAAAGGATATCACTACTACCTCAGTAGCCCAAAGGATAATGGCTAATCATGAAGCTTACGTGAAACGCAATGCTAAGAAGGCTAAGAGTGAGAAGAGATACTATGAAGAGAAGAAATATGTCTCTGGAGACTAGCATGTATAGAATCATGATGCAGGCTTAGTTTGATATTGCTCTACAGACTCAACCCTGTCACGGAGATGCTGGAATATAGCAGGAATTCATTCATACACACTTTGTGATGGACAACTAGTACAGAGTATGACATAGAANAATTATTGTAGATTACTACTTGGGAATACCAATGTACTGGCAGTGTCCTGACATTTTTCTTGTCATCCGGAAGGCAGGCTCCCCATGTAGTTTGCCCACCGGTTTTATGGCATTTGGATTTTGATGTGATTTTNCCCTATGTAGTGTACTCCTCCTATTAGGAACCCTGATGGTGTAATAACTGTCAGAAGTTACACGCATTATACATTCTGCTGTTATTTATTTAAACTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00165	287211	291636	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00967	PCYT2	EC:2.7.7.14	Glycerophospholipid metabolism	map00564
			Glycerophospholipid metabolism	map00564
			Phosphonate and phosphinate metabolism	map00440
			Phosphonate and phosphinate metabolism	map00440

Gene Ontology

biological_process
GO:0009058 biosynthetic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000165s00008531.1	PF01467.21	CTP_transf_2	70	197	4.60E-17
Glyur000165s00008531.1	PF01467.21	CTP_transf_2	258	384	4.70E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.527
SRR1783600	control	23.506
SRR1783602	moderate drought stress	27.780
SRR1811619	moderate drought stress	27.395

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.071
DRR006520	Root Summer glycyrrhizin high producing strain	31.995
DRR006521	Root Winter glycyrrhizin high producing strain	68.673
DRR006522	Root Winter glycyrrhizin high producing strain	70.533
DRR006523	Root Summer glycyrrhizin low producing strain	36.349
DRR006524	Root Summer glycyrrhizin low producing strain	36.224
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.762
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.401

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.640
SRR2868004	Drought Stress (root)	50.166
SRR2967015	Control (root)	55.036

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.043
SRR9715740	Leaf	19.006
SRR9715741	Leaf	22.209
SRR9715739	Root	3.226
SRR9715742	Root	14.972
SRR9715743	Root	11.746

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.876
SRR8749028	MeJA induced 9h	29.827
SRR8749029	MeJA induced 9h	25.552
SRR8749030	Uninduced	16.649
SRR8749031	Uninduced	30.681
SRR8749032	Uninduced	20.710

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	51.841
SRR8400027	Control - Root	52.004