Gene detail

Gene detail information of Glyur000165s00008528

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G01780.2	5.00E-73	2-oxoglutarate-dependent dioxygenase family protein
NR	XP_004514555.1	1.21E-126	PREDICTED: uncharacterized protein LOC101492962 [Cicer arietinum]
COG	YP_003657592.1	8.00E-24	DNA repair protein [Segniliparus rotundus DSM 44985]
Swissprot	tr\|Q9SA98\|ALKBH_ARATH	3.00E-07	Alpha-ketoglutarate-dependent dioxygenase alkB
trEMBL	tr\|K7K3K1\|K7K3K1_SOYBN	2.00E-123	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G32116.1}

Sequence

Transcript Sequence

>Glyur000165s00008528.1
GGGCGAGGTTGGAGAGAGAGGGAGGCAATGAGAGAGATATGTAGGTAGGAGGATATTTAAACGTCGTTACACATGATGGCGTAAACCCTATCAGAAAGTTTTGAAGGACATATTTACTTGGAAACGGTAGCATTTACTTCCATAACCGCCACCGCCACCGCCAAGGAATCCGCCATGTCCGTCCAAGTTGCTGCAGCGCCTAACAGAGTTCCCCTTTCGTCCATTATTGGGTCAGGGTTGAGATGCTTCATTATTGCACATCAGCCCCGTATACCAGAGTTTAAACAATACGACATCTGCTTTCATGGAAAAAGAAATTCTGCTCCAATAGGAGATACATTGCTTGAAGAAAACAAAGAAAGAAGCTGCATTGAGATGCGGGAGGGAGGAACAAAAGAAGGGATACTGAGGCCCGGGATGGTTCTCTTGAAATATTTCATANCCCACAGATTCTATCAACCAGCTTTTGCAAACGGTGCCAAACTTCGATTGAAGATGATGTGTCTTGGTATGGACTGGGATCATCAAACCGGAAAATATGGATATAAACGGGTAATTGATGGTAGCAAGCCACCTAGTATTCCCCGTTACTTCAGTAAGTTGGTTATAAGAGCAATGCAAGAAGCACATANTCTAATTAATAAGGAACATGGAATAAGGCATGTTGATGTGGAGGACATACTCCCTTCGCTGACTCCTGATATATGCATTGTCAATTTTTATTCAACCAGTGGAAAGCTTGGTCTTCATCAGGATCGTGATGAAAGCAGAGAAAGTCTGCGAAAAGGGTTGCCTGTTGTATCCTTCTCTATTGGTGATTCAGCAGAATTTGTTTATGGGGATCAAAGGGATGTTAAGAAGGCAAAGAATGTAGTCCTAGAATCAGGGGATGTGTTGATATTCGGTGGCAAATCGCGACATGTGTTCCACGGTGTGTCATCTATCATACCCAATTCAGCCCCAAAGGGATTGCTGCAAGATACTTGCCTTCGTCCTGGCCGCCTCAATCTTACATTCAGACAGTATTAATGCACTCTCAAGATCAACAATGCTTGCTATTGATGTTCTTGTAGTTGACGCATTTTATAATTTAAAATTTTGTCCCAGGGAACTTTGCATAAACAGATTGTTGTTTAAACATGTCTGTCAATTGTGTTGGTAACTAGCCGGCCCTTTTGTGTCTACATTGAAAGTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00165	279294	283670	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000165s00008528.1	PF13532.1	2OG-FeII_Oxy_2	91	282	2.30E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.501
SRR1783600	control	2.240
SRR1783602	moderate drought stress	4.554
SRR1811619	moderate drought stress	4.627

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.493
DRR006520	Root Summer glycyrrhizin high producing strain	3.472
DRR006521	Root Winter glycyrrhizin high producing strain	2.337
DRR006522	Root Winter glycyrrhizin high producing strain	3.060
DRR006523	Root Summer glycyrrhizin low producing strain	2.084
DRR006524	Root Summer glycyrrhizin low producing strain	1.810
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.416
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.572

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.192
SRR2868004	Drought Stress (root)	3.186
SRR2967015	Control (root)	2.476

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.266
SRR9715740	Leaf	0.429
SRR9715741	Leaf	0.443
SRR9715739	Root	0.249
SRR9715742	Root	0.734
SRR9715743	Root	0.794

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.393
SRR8749028	MeJA induced 9h	0.942
SRR8749029	MeJA induced 9h	1.052
SRR8749030	Uninduced	0.703
SRR8749031	Uninduced	0.258
SRR8749032	Uninduced	0.855

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.355
SRR8400027	Control - Root	4.034