Gene detail information of Glyur000165s00008514 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G19580.1 | 2.00E-46 | tetraspanin2 |
| NR | AFK37963.1 | 5.36E-117 | unknown [Medicago truncatula] |
| Swissprot | tr|Q9ZUN5|TET2_ARATH | 1.00E-91 | Tetraspanin-2 |
| trEMBL | tr|I3SCH1|I3SCH1_MEDTR | 2.00E-117 | Uncharacterized protein {ECO:0000313|EMBL:AFK37963.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00165 | 213088 | 215837 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000165s00008514.1 | PF00335.15 | Tetraspannin | 5 | 204 | 1.20E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 113.020 |
| SRR1783600 | control | 112.141 |
| SRR1783602 | moderate drought stress | 145.339 |
| SRR1811619 | moderate drought stress | 144.998 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 79.372 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 82.312 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.168 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.185 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 61.478 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 62.952 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.933 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.912 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 35.414 |
| SRR2868004 | Drought Stress (root) | 45.763 |
| SRR2967015 | Control (root) | 46.765 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.800 |
| SRR9715740 | Leaf | 9.698 |
| SRR9715741 | Leaf | 9.713 |
| SRR9715739 | Root | 91.455 |
| SRR9715742 | Root | 73.009 |
| SRR9715743 | Root | 73.655 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.690 |
| SRR8749028 | MeJA induced 9h | 10.850 |
| SRR8749029 | MeJA induced 9h | 11.124 |
| SRR8749030 | Uninduced | 1.282 |
| SRR8749031 | Uninduced | 0.654 |
| SRR8749032 | Uninduced | 0.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 93.150 |
| SRR8400027 | Control - Root | 108.956 |