Gene detail

Gene detail information of Glyur000165s00008510

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G19600.1	0	K+ efflux antiporter 4
NR	XP_003530469.1	0	PREDICTED: K(+) efflux antiporter 4-like isoform X1 [Glycine max]
COG	YP_007155601.1	7.00E-100	Kef-type potassium/proton antiporter, CPA2 family [Anabaena cylindrica PCC 7122]
Swissprot	tr\|Q9ZUN3\|KEA4_ARATH	0	K(+) efflux antiporter 4
trEMBL	tr\|I1KPS4\|I1KPS4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G03320.1}

Sequence

Transcript Sequence

>Glyur000165s00008510.1
ATTCATAGATGCTTTGCAATTAATTTGCGTAAGGTAGGAGTGTAGGACACAAGTAGGCATTTTGATTTTGCAGCGACACACACGCGCCCTATTGTGCATATTCCTGCCGTAGCACTTGGCCATACTCGCGTCAGAACCACCTTTATTCAATTTTCACTACACCTAATATCGAGGACCATTTCGTCCTTTCCCACTTCCACTCCACCTCCCTCCCATTCTCTATCTCTCACACACACAAGCTTAACCCGCAATCTCTGTGTGTGTCTGCAATGCATCTTTCTGCGCGTAAGAGAGATTTCGCGCGCCAAACACGACGGTGCTGTTAACGGTGTCGTTTTAACGCTCCTCCTCCATTGCTCTCTCTCTCTCTCTCTGAGCCTGGGAGATGAGGTTATCATTACCTGCGATTCTCAACCTTCTCATTCTCTGCGATCTACTTCTTCTCTGTCATCCCTCATTCTCTTTCTCTCTCCTCGCCGCTGACTCGGAGCCGGAGCCGAAGCCGAAGCTTCTCCTCCCTGAAGCCAACGCAACCGCCCTCGGCAATGCCTCGCTCGCGAGATCCGACGACGATAGTTTCGCCAACATGATTGATCGGGCTCTCGAAAGGGAGTTCCCCGAGAATGAGCAGAACGAAGGTACTGATGCTGGTGGTTTCAACAACAGTGTTGCTGAACAGCAGGCTGTTTTGGAAACTGTTGCTAGAGTTAAGCACAAGAAAAATGAGAGCAAAGAGGAAAAGTCATTTCAGTTCCATGATGTTTTCAATTTGGATAATGAGAATCGGGTTGACGATATGCCAACTTTAATTGATCGGAAGGACAATGTCTTTATCATATCCAATCCCAAGTCAAAGTATCCTATTCTTCAATTAGACTTGAGATTGATATCAGATCTTGTGGTTGTTATTGTCTCTGCAACCTGTGGTGGCATTGCATTTGCTTGTGCTGGACAACCGGTTATGACTGGATATCTGCTAGCAGGATCGATCATTGGACCGGGAGGTTTGAGTTTTGTCAGTGAAATGGTCCAAGTTGAGACGGTTGCTCAATTTGGTGTTATCTTTTTGCTCTTTGCATTGGGCTTAGAGTTTTCCACAACAAAGCTTCGGGTTGTTCGAGCAGTGGCTATTCTTGGAGGTCTGCTCCAAATTCTCTTATTTATGTTCTTGTGTGGAATAACAGCNTCGTTATGTGGTGGTAAATCATCTGAAGGAATATTTGTTGGTGCATTTCTATCCATGTCTTCAACAGCAGTGGTCTTGAAATTCTTAATGGAAAAGAATAGTGTCAATGCCCTTCATGGTCAGGTTACAATTGGAACTCTGATTCTGCAGGATTGTGCTGTTGGTTTGCTCTTTGCANTGCTTCCTGTCTTGGGTGGAACATCAGGTGTTCTCCAGGGAGTTATATCCATGACTAAATCGTTGTTAGTCTTAATTACATTTTTGGTCGTTTTGTCAATAGTATCTCGTACTTGTGTACCGTGGTTCCTTAAGCTTATGATAAGCTTATCATCTCAGACCAATGAACTTTATCAATTGGCATCAGTGGCATTCTGCCTACTAGTTGCTTGGTGTAGTGATAAGCTGGGTTTAAGCCTTGAACTAGGATCCTTTGCTGCGGGAGTGATGATATCAACAACAGATCTTGGTCAACATACGCTTGAACAAGTTGAGCCAATTCGCAACTTTTTTGCTGCTCTGTTCTTGGCCAGCATTGGGATGCTTATACATGTCCAGTTCCTTTGGAATCATGTTGACATTTTACTGGCAGCTGTTATATTGGTGATCATTATAAAAACAATTGTAGCTGCATCTGTTGTCAAGGGGTTTGGATACAACAACAAGACTTCAGTTCTTGTTGGGATGTCCCTGGCACAAATTGGGGAATTTGCCTTTGTTCTTCTCAGTCGTGCTTCAAATCTTCATTTAGTTGAGGGGAAATTGTATTTATTGCTGCTTGGAACAACAGCTCTCAGTCTGGTGACTACACCTTTGCTTTTCAAGCTAATCCCTGCTGTTGTGCATCTTGGTGCGCTGCTGAGGTGGTTCCCTCCTGATAGTCCGGCTGAGGTTGCATTTAAAGGGGACAGCTTTCGTGCAGACAGTGCTAAGCGTATTACTTTGATGGTTCAAGGCGCTCATGATTCATGATATCAAAATATATTATGAAGCAGGAAAGGAATTTGCGGGATTTACCTGATGGCTTCTCTTACTTTGGAGAACAGGTGCCAAAGAGTGCAAATAAGGTTTGACTAAATGGATACATTTTCTATATTGCAAAGAACTGTATATCTTCGGAGCACGCACCGGAAACAGTGAATGCAATGGCAAACGCAGGCCACGAGGGCCAGGAGTTAAAACCGGATCCATCAACTAACCTAGTAACTTAGGCTGTTGTTATTAACTTGAATGGCCTATTTTTGTGTATAAAGTAAGGTAATGTCTAGTTGCAGTTGGTAGTGTAATTCATTTTAGACCCCCCCCCCTTCTCTCTCTTCCAATCTCCCCAATTATTTTATATCCAAAATTTTGTGTTGATTGGTTTTTGAATGTGTAAGTTGTCTCTGTACAAGTCTAGACGCCAAGGCAGTCATCAATGTCAAATGTATCATGCTCATGAACTATTAAAATGATTAATGATAGCGGAAGGCAAATTGATTTGCGGTTCATCACTTCTAATTGATTACCGAAGATGTGGGATGTGTTGAGTAATCTTCACCAGCTACCGAGCAGAAATCCTTTTTCTTTCCTTTTTTCCATCACTGCCCGTCAAATCCTGTCTCTTCTTGAGCCAAAGCATAATTGCAAAAATGAGCNGCAGCTGTTTAGAAGTTTTCATTTGCCAATATATGTTCATAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00165	194701	204747	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0015299 solute:proton antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000165s00008510.1	PF00999.16	Na_H_Exchanger	172	541	1.60E-78

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.918
SRR1783600	control	13.762
SRR1783602	moderate drought stress	7.942
SRR1811619	moderate drought stress	7.983

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.129
DRR006520	Root Summer glycyrrhizin high producing strain	9.753
DRR006521	Root Winter glycyrrhizin high producing strain	6.015
DRR006522	Root Winter glycyrrhizin high producing strain	5.744
DRR006523	Root Summer glycyrrhizin low producing strain	8.529
DRR006524	Root Summer glycyrrhizin low producing strain	8.338
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.028
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.959

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.285
SRR2868004	Drought Stress (root)	12.445
SRR2967015	Control (root)	11.427

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.271
SRR9715740	Leaf	2.552
SRR9715741	Leaf	2.144
SRR9715739	Root	4.830
SRR9715742	Root	7.157
SRR9715743	Root	6.631

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.230
SRR8749028	MeJA induced 9h	14.136
SRR8749029	MeJA induced 9h	14.130
SRR8749030	Uninduced	10.522
SRR8749031	Uninduced	6.830
SRR8749032	Uninduced	5.216

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.882
SRR8400027	Control - Root	18.933