Gene detail

Gene detail information of Glyur000165s00008496

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G43610.1	2.00E-96	Spc97 / Spc98 family of spindle pole body (SBP) component
NR	XP_004511288.1	0	PREDICTED: uncharacterized protein LOC101489155 isoform X1 [Cicer arietinum]
trEMBL	tr\|K7K5M8\|K7K5M8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G45540.2}

Sequence

Transcript Sequence

>Glyur000165s00008496.1
GTTTTCTACAATTTCTGGGACTAAGTTGCGATAGAGTGAAAAGAGTGTCAGAGTGAAGAGAGGGAGATGATGGAATGGGCAATGAGTGCGTCGTTGTTGGAGAATTTGAAGGTGGAGGATCCATGGGTTCCCCCAAACACATGGGGATCCATACCCTGTGAAAGTGGAGTCGGAGTCGGAGTACGCTCCTCTTCCAAATCAAATCAAACCCTCTCCACTCTTTCTGAATCAAGTTTGGTGAGGTTGGTGATGAATGCTATGCAAGGCGTAAAATCATCCCTTATTAGCATCCAGAAGCTATCTGCCATCTTTTGTTCTGATCCGGCGGACAGGACCTTCCTCCGGATTCGAAATCTCTGGAATCGAGCTTCCAGCACTCATTCTTTGGGAAACATACTTACGTCTATAGGTTGCACCGGCTCTCTAGTTTTTCTTCTGCGTGAATTTGTAGATTATTTTACAAATACCAATGTGGACTGCAGTTTTGGACAAAATCAGCTTCTTCAAGAGGACAGGGGGAGAGAGGGAGAGCTCCCTCCCTATAGTCTTGTTAATCAAGCCTTTGCTGTAGCTGTGGGAAAGGTCTTGGAAGGGTACATCTGTGGACTGGACACAATTCATGCATCTAGTGTAGTGCATTCTGAAATTACACTGCTTGAGTTTTACCTGCATACAAAAGAACTGAGGACTCAGATTGAAGCCCTTGCAAGCATATGTAACCTGCAAAAGTGGGATCATTGCTTTTCAGATAATGCTTTTGAGGATCTGATTGCTAAAGCTACTTCTGAATTTTGTAACTTCTGCAGAGGGGGGGATTTATTAACATTTTTGTACGCACAATTACAGGTCGCTGATCCTGCTCGCTGCACTTTGCTTAAGTTCCTTTTTCTTCAGTCATGTGAACCATATTGTGGGTTCATTAGATCATGGATTTTCAAAGCAGAAATCCATGACCCATATAAGGAGTTTATTGTAGAAAATATGGAGTGTTTATCTCCCAAGTCACGTGTTAAAGCTGGCAATTCTGTTGACTTCCCACAGGCAGGCATCAGTGTACGAGATGGAGCTCCCATTCCTGGATTTCTCAAAGACTTATTGGTTCCACTTGTTAGAGCTGGTCAACAGCTTCAAGTACTGTTGAAATTGCTTGAAGTGTGCATTGATGTTGCTGCTGGAGAACATAGTTCTGCTGACTTTCTACCCTGCTGGAGTGGCTTTTCAAGCAGCAGTCTGTCTTATTCTTCTCCGTTGACTTTCAGCAAAGATATTATAGAAAAGATGGTGCTTGTAAGAGAAAGTTATTATAAAAGGATGAATGAAAAAATTGAAAGCCTTTTAAGCAGCTTAGAAGTTAGATATCAGCAGGTAATTATGCATGCTTCAGTACCTTATTTTGATAATTTTTTTTGGACTTTAGACAAACTAGGCCAGCTCATGTCAGAAGACGAATCCATTGTCTGTCCAACAGCAGATAAAAGAAGCTCAAATATTACAGTAGATGAGATCTCTTTTTTTGAAGATATGTATGGTCCATCTGAAAGTCCATCCTTAAACAGCTCTTTTTTTTACTTGGAGCCTGATCAGCTTAGTGGCTGGCCTTGTCCAATAGTTGTTTTTTTAAATCATTTATCTGCCTTAAGCTTCTTAAAATCATCTACCTTAAATTTTTTTATACAAAATTCCTGTCATCATGAAAAGTCAGGCAGTGATTCACATTTTTTTTGTGATAAAATGGATGCCATTGATCATATGGTGAAGTCCTCCCATGTTTTTTTGGTATCAAGTCACATGTCTGATCCTCTAACTCGTGGGAATTCAAGTTTTTTTTGCAAATTCAGTATTCAATATAGAGATAGTTGCATTAACAGTTATTTTTTTTTGAGACACTTACTGAAAAAATCATTTGATGATGATGGAACTGTTGTTTTTTTGGTGACTGAAAAGCACCTGCAGTCCTTGAAATATTCCAAGTTATGTTTTTTTGTAATTGCCATTGGTGATACTTTGAGTGGGGAAACCTTGATTGGGTTTTTTTCTGACAATAATACACTTGCTTCAAGAATGCTTTGCTTCTACCGATGGGTTTATATGGACAAGTTACCCACCAACTCTGGATGTTTTTTTGGATCTTCATTTCCACTGGATAGTAATGTTCCTAGTTATGCTAATTTTTTTTATGAATATGAAGAAATTGGCCATGGTAATGAGGATGGGTCGGTTGTTTTTTTCAAATATTGTTTTGATGCTTCACTGGATGTGATGGACCATAAGCAATGTGTTTTAACAGTTGTATCTGGTGGAAGCAGCTGGGAAAGATTGCTGGGTAATTTTCGGAAAACTGTCAACTGTGGTGCTACTCAAAAGCAGAATTTATTGTTTTTTTTTGAGATGCCACTTGATATTATAATTGACAAGTGCTTATTGCAGGATTTTTTTCTTCAGTATCCTTATCTTGATATTTATTCTGATGTCAGATACAATTATGTCAGCAAACTAATCATCATTTTTTTTGAGGAGGCATTTAAGTTGCAAGAGCATCTTTTAGCACTCCGGCATTTTTTTTTTATGGAGTTAGCAGATTGGGCAGATTTGTTTATCTTGTCTCTTTTTTTTTATAAGTGGTCTGTCACAGAAGCTAATGAGAGACTTTTTTTTATTCAAGGTCTACTTGAATTGTCAATTCAAAAGTCTTCTTGTGAGTTTTTTTCTAATAAGGATCGGTTGTTTGTGTACATGAAAGGACATGGGAAATTTTTTTTTTCAGCATCTGCTATAGGACTTGGCTACCATGTGGATTGGCCTTTTTTTATTATTTTGACACCTGTTGCATTAAAAATATATGCTGATATATTCAGCTTTTTGATACAAGTGAAGCTTGCCATTTTTTCATTGACCGATGATCTAAATTCTGAACTACACCAGCATGAGGCAGGACATCTCAATATAGTGATAAAGATGAGGCACCAGATCAGCCATTTTGTATCTGCTTTGCAGCAGTATGTAGAGTCACAATTATCTCATGTGTCATGGTGCAGATGTTTCCTGTCGGATGAAACAACGGCTGTAGTTTTTTTTATAGAGAGCATTTTGCAATGTGCAGTTGATTTCCGGTCTTGTCTTTTTTTTGGTGTTTGGGATACTGGAAGTGATCAGGGAAATTTGTTAGGCAAATTTTTTTCAATCAATATATCCCAGGTGCTTTCCATAAAGCATTTTTTTGATAGAAGTCTAAATGAATTGCACATTTGCTATATTAAGGAACCTTTTTTTTGGAATTATGGGCTTTCTCAATTCTGGGAATATCTTAACTATAATGTTTTTTTTTCACATGTCAGCAATGGGATGGGGTACCGTGCTGTCTGA

Protein Sequence

>Glyur000165s00008496.1
MMEWAMSASLLENLKVEDPWVPPNTWGSIPCESGVGVGVRSSSKSNQTLSTLSESSLVRLVMNAMQGVKSSLISIQKLSAIFCSDPADRTFLRIRNLWNRASSTHSLGNILTSIGCTGSLVFLLREFVDYFTNTNVDCSFGQNQLLQEDRGREGELPPYSLVNQAFAVAVGKVLEGYICGLDTIHASSVVHSEITLLEFYLHTKELRTQIEALASICNLQKWDHCFSDNAFEDLIAKATSEFCNFCRGGDLLTFLYAQLQVADPARCTLLKFLFLQSCEPYCGFIRSWIFKAEIHDPYKEFIVENMECLSPKSRVKAGNSVDFPQAGISVRDGAPIPGFLKDLLVPLVRAGQQLQVLLKLLEVCIDVAAGEHSSADFLPCWSGFSSSSLSYSSPLTFSKDIIEKMVLVRESYYKRMNEKIESLLSSLEVRYQQVIMHASVPYFDNFFWTLDKLGQLMSEDESIVCPTADKRSSNITVDEISFFEDMYGPSESPSLNSSFFYLEPDQLSGWPCPIVVFLNHLSALSFLKSSTLNFFIQNSCHHEKSGSDSHFFCDKMDAIDHMVKSSHVFLVSSHMSDPLTRGNSSFFCKFSIQYRDSCINSYFFLRHLLKKSFDDDGTVVFLVTEKHLQSLKYSKLCFFVIAIGDTLSGETLIGFFSDNNTLASRMLCFYRWVYMDKLPTNSGCFFGSSFPLDSNVPSYANFFYEYEEIGHGNEDGSVVFFKYCFDASLDVMDHKQCVLTVVSGGSSWERLLGNFRKTVNCGATQKQNLLFFFEMPLDIIIDKCLLQDFFLQYPYLDIYSDVRYNYVSKLIIIFFEEAFKLQEHLLALRHFFFMELADWADLFILSLFFYKWSVTEANERLFFIQGLLELSIQKSSCEFFSNKDRLFVYMKGHGKFFFSASAIGLGYHVDWPFFIILTPVALKIYADIFSFLIQVKLAIFSLTDDLNSELHQHEAGHLNIVIKMRHQISHFVSALQQYVESQLSHVSWCRCFLSDETTAVVFFIESILQCAVDFRSCLFFGVWDTGSDQGNLLGKFFSINISQVLSIKHFFDRSLNELHICYIKEPFFWNYGLSQFWEYLNYNVFFSHVSNGMGYRAV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00165	102383	114827	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0000226 microtubule cytoskeleton organization

cellular_component

GO:0000922 spindle pole

GO:0005815 microtubule organizing center

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000165s00008496.1	PF04130.8	Spc97_Spc98	62	989	1.50E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.278
SRR1783600	control	1.313
SRR1783602	moderate drought stress	1.194
SRR1811619	moderate drought stress	1.146

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.844
DRR006520	Root Summer glycyrrhizin high producing strain	1.115
DRR006521	Root Winter glycyrrhizin high producing strain	0.539
DRR006522	Root Winter glycyrrhizin high producing strain	0.431
DRR006523	Root Summer glycyrrhizin low producing strain	0.812
DRR006524	Root Summer glycyrrhizin low producing strain	0.826
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.818
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.674

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.531
SRR2868004	Drought Stress (root)	3.183
SRR2967015	Control (root)	3.956

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.781
SRR9715740	Leaf	1.042
SRR9715741	Leaf	1.379
SRR9715739	Root	0.217
SRR9715742	Root	1.903
SRR9715743	Root	1.667

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.806
SRR8749028	MeJA induced 9h	1.873
SRR8749029	MeJA induced 9h	0.370
SRR8749030	Uninduced	0.192
SRR8749031	Uninduced	0.342
SRR8749032	Uninduced	0.338

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.900
SRR8400027	Control - Root	5.330