Gene detail

Gene detail information of Glyur000165s00008487.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G44750.2	0	DNA-directed DNA polymerases
NR	XP_004511296.1	0	PREDICTED: DNA repair protein REV1-like isoform X1 [Cicer arietinum]
COG	YP_004114698.1	8.00E-57	DNA-directed DNA polymerase [Pantoea sp. At-9b]
Swissprot	tr\|Q8RXL1\|REV1_ARATH	0	DNA repair protein REV1
trEMBL	tr\|A0A072UBX5\|A0A072UBX5_MEDTR	0	DNA repair protein REV1 {ECO:0000313\|EMBL:KEH27324.1}

Sequence

Transcript Sequence

>Glyur000165s00008487.2
ATGAGTTTGGACTCGTTTCGCTCCTCCTCCTCCTCCTCAGCCCCTAATTCTAAGCGGAGTTTCTCATTCTCCAATTCAGCATCTTCCAATCGTTCCAATGATAACAGTAACACTGCTAATGACAATACCAACAAGAAGAAGAGGACGACGACAACCACCAACCAGAAAACCCTAGGCGTCGCTTGGGGCTCAAATGCTCTCTCCTCCTCCTCCTCCTCCCGAAAATCACCTTTCTCCGATTTCGGCAGTTATATGACAGTGAAGAATCGGAAGCTACACAATCAGTTTAACGCTGAAGCTTCAACGTCTTCGTTTAGTGCCCCTACTAGTTCTGGGAAGCCTATATTCGCTGGAGTTTCAATTTTTGTTGATGGTTTCACGGTTCCATCAAGCCAGGAACTGCGGGGCTACATGTTGAAGTATGGTGGAAGACTTGAGAATTATTTCTCAAGACATCGTGTAACACACATCATCTGCAGTAATCTCCCAGACAGTAAAGTTAAGAATCTGAGAGCTTTCAGCGCAGGGCTGCCAGTGGTGAAACCCACCTGGATTTTAGATTCAGTTGCAGCTAATAGGCTCTTGAGCTGGGTGCCTTATCAGCTTGACCAGCTTCCCAATAACCAACCGAAACTGTCAGCATTCTTCTCATTGAAAAGTGGCAAAATGTCAGAGGATGCTTTTACAAATGCCCTTTGTCAAGTAGAGTCAGACATTGAAGATTCATCTACGAGGGTTGGCAAATCAGAGGATAAACATTCATCCAAAGATGGGGAGATGATTGATCTTAGCAGGCAAACCAGTGCTAAATCTGATGATATTGTCTCTGAGAATACCAATGCAATTACGATGGAAGAGCCGACTAGTGTTGGAGTTAAATGTGACGAAGAAGAGCTGGCAGGAAGAAGCAATGATGCGGCTGAAGATGAGAGATATGTCCAAGGTGAACTTGAACCTAATAATCGAGAACCTTCTACATCAACTAGTAACCCCTGCTCACATGACCAAAATGTAAAAGAATTTCCAAGTTCTGCAGCAACTAGGCCTTCTAAACAGTGTCATTCAACTGTTGATGATCCTAATTTTGTGGAAAATTATTTCAAGAGCTCAAGGCTACACTTTATAGGAACCTGGAGAAATCGGTATCGAAAGCGTTTCCCCATCTTGTCTACTGGGTTTGACAATGAAATTTATGATATTAATGCTCCTGGTAATTATGGGAATTCAGTCATTATCCATGTTGACATGGATTGCTTTTTTGTCTCAGTGGTTATCAGGAACCAACCTGAATTGTTGGATAAGCCTGTAGCTGTATGTCACTCAAATAATTCGAAGGGAACTGCTGAGATTTCCTCTGCAAACTACCCAGCTCGTAGTTATGGTATTAGAGCTGGTATGTTCATTCGAGATGCCAAGTCTCTTTGTCCCCACCTTGTTATCTTTCCATACAACTTTGAAGCTTATGAGGAAGTAGCTGATCAGTTTTATAGCATATTGCATCGGCGTTGCAACAAAGTGCAGGCTGTAAGCTGTGATGAAGCTTTCTTAGACATCACACATTCAAATGTTGAAGATCCTGAACTTTTTGCATCATCAATTAGAGAAGAGATCTATGAGACCACTGGATGTACAGCTAGTGCTGGTATAGCTGGAAATATGCTAATGGCTCGTATTGCTACTAGAACTGCAAAACCAAATGGTCAATATCACATAACTCCAGAAAGGGTTGAAGATCATTTATATCAACTCCCAATTAATGCACTTCCTGGAGTAGGGTATGTTTTACAGGAAAAATTGAAGAAGCAGAATGTTCATACGTGTGGACAATTGCAGATGATTTCTAAGGCTTCACTGCAGAAAGACTATGGACTTAAATTGGGAGAAATGCTGTGGAATTACAGCAGAGGAATTGATAACCGGTTGGTTGGGGTTTTTCAGGAAAGTAAGTCTATCGGTGCTGATGTAAATTGGGGTGTGAGGTTCAAAGATATGAAAGATGTCNGTACTCTTCTACACTATTGTGAGCACTTCCTAATAAACCTTTGCAAAGAAGTCTCATTACGGTTGCAGTGTTGTGGAGTGCAAGGGCGCACTTTCTCTCTCAAGATCAAAAAGAGAAGAAAAGATGCTGATGAACCTGCAAAGTTTATGGGCTGCGGAGACTGTGAAAATTTGAGTCATTCAGTAACGATTCCTCTTGCTACTGATAATGTGGAAGTACTCCAAAGAATAGTAAAACAGCTTTTTGGAAGTTTTTACATAGATGTCAAGGAGATTCGAGGTATTGGCTTGCAAGTTTCCAGACTTGAAAGCACAGAAACTTCTAAGCAAGGTGCAGAAAAGTATAATTTGAAATCATGGGTCACTTCAGGATCTGCAAGTAAGGAAAAACAGAAATATCCTATGGCTAATGGTCAGGACAAGCGGAATATGTTTGACACTTCTGTTCATGAATGTAGAGATCCACAAGGGTCTTCAGTTCAAATGGAGAATAACATACAAAATAACCAAGCTACTGCTGACCCAATTTCAACACCGCCTCCTTTATGTCACCTTGATGTGGAAGTTATAAGGAATCTTCCCCCAGAAGTATTTTCAGAATTAAATGAAATTTATGGAGGGAAGTTAGTCGAATATATTGCTAAAGGGAAAGGCACAAGTGAGAGTTCTAGCTCTTTACGAAACTCGTTTTTGGAACAAGAAGCAATAAACAATGAAGAGGAACTTTTGTATGTTGACCCGATTCCTCAGAAAAAGCTATCATCTGAAATTGAGGCAATGCAACATGAGGCAGAGGGAGGTGAAGCTGTACCTGGTTCAGGGTCTGGACCCTTTTTTAATGTTGCTCACAATTCAATATTTGAAAAAGATGATTTATTGCCTTCTTCTTTAAGCCAAGTCGATGGTTCAGTGTTACAAGAATTGCCTGAGGATTTGAAAGCTGTCATTGTTCAGCAGCTTCCGGCACACAGGAAACAAGAGATTTGCTCCAATGTTGCCGTCGTCCCTCCTAGTGAAAACCATCAGGTGTCGTTAGGTATTAAAAGTTCTGAGAATCCTGGATCAAATCATCATGTTTTGAGTGAATGTCTTTGGGATGGGAATCCTCCAAAATGGGTTGAGAAGTTTAAAGTCAGCAGTTGTTCAATCTTAAAGATACTCGCAGAAATGTATTACAAATCTGGGTTGAATAGCACATTATCTTCAGTTTTGCACCAAATTATATCTGAAATCCACCAGATAAATCAAGCCCATCAGATTTCTGATGGCTCTATTAACATCATGTGTGAGCTACTGAAGCAGTATATCAAAGTGAAGATAGGAAGAGATATTGAAGAGATTTATATTTGTTTTCGGCTTCTGAAAAGGTTTGCAGCAAAATCACAATTTTTCCTACAAGTGTATAATAGTGTATTTCCATACCTTCAGATCGGTTCAACCCGTTGGACTGGAACCAGTCACTTTGTAGGTCTTGTCAAGGCAGCTGTTGAGGACAATTATGGAGGAAGTTTGTTTATAACATCATAGTAATACTCAAATAGTCAAATTCTTACCTTTTACTATGGGAAACTTGAGCAAAATTCACTGGATTCTTTATGAGCCTATGTGGTCAAGTCACAAATCAACAGTTGCTAACGACCATGATCTCCTGCAGAGTATGTTTGACCTTAATGTGATAGCTAAACATTTTATGCAGTGTATGTGCTTATTTAGTGGATGTTGTATTTAATTTCTA

Protein Sequence

>Glyur000165s00008487.2
MSLDSFRSSSSSSAPNSKRSFSFSNSASSNRSNDNSNTANDNTNKKKRTTTTTNQKTLGVAWGSNALSSSSSSRKSPFSDFGSYMTVKNRKLHNQFNAEASTSSFSAPTSSGKPIFAGVSIFVDGFTVPSSQELRGYMLKYGGRLENYFSRHRVTHIICSNLPDSKVKNLRAFSAGLPVVKPTWILDSVAANRLLSWVPYQLDQLPNNQPKLSAFFSLKSGKMSEDAFTNALCQVESDIEDSSTRVGKSEDKHSSKDGEMIDLSRQTSAKSDDIVSENTNAITMEEPTSVGVKCDEEELAGRSNDAAEDERYVQGELEPNNREPSTSTSNPCSHDQNVKEFPSSAATRPSKQCHSTVDDPNFVENYFKSSRLHFIGTWRNRYRKRFPILSTGFDNEIYDINAPGNYGNSVIIHVDMDCFFVSVVIRNQPELLDKPVAVCHSNNSKGTAEISSANYPARSYGIRAGMFIRDAKSLCPHLVIFPYNFEAYEEVADQFYSILHRRCNKVQAVSCDEAFLDITHSNVEDPELFASSIREEIYETTGCTASAGIAGNMLMARIATRTAKPNGQYHITPERVEDHLYQLPINALPGVGYVLQEKLKKQNVHTCGQLQMISKASLQKDYGLKLGEMLWNYSRGIDNRLVGVFQESKSIGADVNWGVRFKDMKDVXTLLHYCEHFLINLCKEVSLRLQCCGVQGRTFSLKIKKRRKDADEPAKFMGCGDCENLSHSVTIPLATDNVEVLQRIVKQLFGSFYIDVKEIRGIGLQVSRLESTETSKQGAEKYNLKSWVTSGSASKEKQKYPMANGQDKRNMFDTSVHECRDPQGSSVQMENNIQNNQATADPISTPPPLCHLDVEVIRNLPPEVFSELNEIYGGKLVEYIAKGKGTSESSSSLRNSFLEQEAINNEEELLYVDPIPQKKLSSEIEAMQHEAEGGEAVPGSGSGPFFNVAHNSIFEKDDLLPSSLSQVDGSVLQELPEDLKAVIVQQLPAHRKQEICSNVAVVPPSENHQVSLGIKSSENPGSNHHVLSECLWDGNPPKWVEKFKVSSCSILKILAEMYYKSGLNSTLSSVLHQIISEIHQINQAHQISDGSINIMCELLKQYIKVKIGRDIEEIYICFRLLKRFAAKSQFFLQVYNSVFPYLQIGSTRWTGTSHFVGLVKAAVEDNYGGSLFITS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00165	58883	72856	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03515	REV1	EC:2.7.7.-	Fanconi anemia pathway	map03460
			Fanconi anemia pathway	map03460

Gene Ontology

biological_process
GO:0006281 DNA repair

molecular_function

GO:0000287 magnesium ion binding

GO:0003684 damaged DNA binding

GO:0003887 DNA-directed DNA polymerase activity

GO:0016779 nucleotidyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000165s00008487.2	PF00533.21	BRCT	113	189	3.70E-07
Glyur000165s00008487.2	PF00817.15	IMS	414	560	2.20E-43
Glyur000165s00008487.2	PF11799.3	IMS_C	644	776	3.70E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.068
SRR1783600	control	4.103
SRR1783602	moderate drought stress	7.342
SRR1811619	moderate drought stress	7.380

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.074
DRR006520	Root Summer glycyrrhizin high producing strain	4.291
DRR006521	Root Winter glycyrrhizin high producing strain	7.068
DRR006522	Root Winter glycyrrhizin high producing strain	6.522
DRR006523	Root Summer glycyrrhizin low producing strain	4.530
DRR006524	Root Summer glycyrrhizin low producing strain	4.472
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.325
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.508

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.999
SRR2868004	Drought Stress (root)	15.445
SRR2967015	Control (root)	14.010

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.068
SRR9715740	Leaf	9.119
SRR9715741	Leaf	8.142
SRR9715739	Root	0.417
SRR9715742	Root	5.977
SRR9715743	Root	4.087

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.456
SRR8749028	MeJA induced 9h	9.195
SRR8749029	MeJA induced 9h	2.440
SRR8749030	Uninduced	3.571
SRR8749031	Uninduced	4.006
SRR8749032	Uninduced	2.007

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.407
SRR8400027	Control - Root	12.988