Gene detail information of Glyur000165s00008476 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G33920.1 | 3.00E-133 | Protein phosphatase 2C family protein |
| NR | XP_007143091.1 | 0 | hypothetical protein PHAVU_007G042800g [Phaseolus vulgaris] |
| Swissprot | tr|O81760|P2C63_ARATH | 3.00E-165 | Probable protein phosphatase 2C 63 |
| trEMBL | tr|V7BF40|V7BF40_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW15086.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00165 | 23386 | 29196 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000165s00008476.1 | PF00481.16 | PP2C | 53 | 302 | 1.80E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.953 |
| SRR1783600 | control | 4.727 |
| SRR1783602 | moderate drought stress | 14.592 |
| SRR1811619 | moderate drought stress | 17.842 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 175.360 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 169.095 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.509 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.445 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 201.031 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 198.303 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 32.349 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 33.250 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.404 |
| SRR2868004 | Drought Stress (root) | 14.398 |
| SRR2967015 | Control (root) | 38.890 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 138.375 |
| SRR9715740 | Leaf | 166.271 |
| SRR9715741 | Leaf | 156.953 |
| SRR9715739 | Root | 173.422 |
| SRR9715742 | Root | 300.392 |
| SRR9715743 | Root | 269.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 79.658 |
| SRR8749028 | MeJA induced 9h | 79.007 |
| SRR8749029 | MeJA induced 9h | 79.679 |
| SRR8749030 | Uninduced | 56.248 |
| SRR8749031 | Uninduced | 21.526 |
| SRR8749032 | Uninduced | 36.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.530 |
| SRR8400027 | Control - Root | 74.422 |