Gene detail

Gene detail information of Glyur000164s00014505.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G45231.2	4.00E-66	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	XP_003589174.1	0	Trimethylguanosine synthase [Medicago truncatula]
COG	YP_006592878.1	7.00E-18	hypothetical protein BN69_2776 [Methylocystis sp. SC2]
trEMBL	tr\|G7I3J0\|G7I3J0_MEDTR	0	RNA cap guanine-N2 methyltransferase {ECO:0000313\|EMBL:AES59425.1}

Sequence

Transcript Sequence

>Glyur000164s00014505.1
ATTAAATTAATTTAACTTTTGCACGAGTAAAAGAATAACTATAACATTCTTGTCCAAAAAGAAAACTATAACAAAAATTCGCCAAAATTTGAATTTTTTAAACTTCCATCCATGGAAATGCCACTGCGAACGGTACGGGTAGTTTACAAAAGAAAGAGCGGCGCACTCAGTTTTGAGGGGTAGGGGGAAGAGACCGCAGTGAACTGAACAGAGTAGTGATTCTTTTTCATTTTCTGTTTCTTTTGTTCCAAGAATATCAAAATGGTAATCGCCGACACCGATTACGAAGGCCCTGCTATCGAAGCCCTCGGTTCTCTCTTCAAGGTCACCCAAATCTTCCTCTGGGACGATGGCTTCCAGCTTTCATCTTCTGCTGAACACTCCAAATGTGGACCAGNAAAAGGCAAAAGAAAGGGTGCACGCTCCAAGCATCAANGTACTTGTAGCAATCCTGTAGATGAAACTCTATATGAAGTGAATGCAGAGGAGGTTGTATCTCCTGCTAANTTTCATGATAAAACAAACAGTTCTATATCTTATATGTCAATGCTGGGACAAAGTGAATTGTCTTATTGTGATGGTGCAGTGGAAGTTGACATGAGCCAATGTGCCTCTAGTGAAGCAGGTAATTCAACATGTTGTACTGGGTTTGCTAATGGTGTTTCCAGGAAACTAATGATGCCCAGAATTGAGAATAGTGACTTTTTAAATGTTAATGTTTGTGTTGATTTGAAAATTGCACCTGTTTCAGATACTGGAGTCTCTGCTGGAAGCCATTTGACAGATTATGAGACTCTTTGCAATGATGATGGCACTGCCACTTGGCAGCCACCAGCTAATGAATCAGAATCGCTACCCATGAGTTTGGAAGGGATTGGAGGTGACGAAATTGATGTGTCAGTTGAATTTGGGGATTGGATAGTGTTCTGGGATACTTTCTATAAGAGAAGATACTTCTACAATAACAAAACACACACTTCTACATGGGACCCACCCCCAGGTATGGAGCATCTAGCATTTGGTGGGTGTACTGAATCAGATGATGGTGAAGCTTTAAAGTCAGCAGAGGAGCGTGAAACTCAGAGAAACACTAAACCACCTGAAGAAACCTTAATTGAAGGGAACTTATTGGGAAAGCAACATGAAGAGTATTCAGCTGAGATTGGAGTTGCTGCTAGCAGTTTGTCCTCTGATATCGCTACAAATAGTGAAGACCAATCTCGTCATCATTCAGATGAGAATCTTGAGATAAGCANTGGCAATGATGGAGTTTCATGCTGCTCAGTATCAAATGCCCTGGATCATATCATTAGCTCTAATGAAAGATGCATTGAAGCAGCATCAGAGGTTGATCATACACCNTTGGAAAACATGGTAATTGATATGTCTGGATTGGATACTAAATCTGATCCTTTCATGTCAAAACAGGAAAAGAAAGTGAAAAGAAGACACAGGCAGAAGAAATTCTATTATGAAACTGAAGATCTTCAATTTCAAAAAATGCCTGAAGCTTATTCTGCTACAATTGAAAAATATTGGTGTCAGAGGTTTGATGATGGTGTAAAAATGGACGAGGAAGGATGGTTTTCTGTCACTCCAGAGGCTATTGCTCAGTATCAAGCATCACGTTGTGCTAGTGGCACGATAATTGACTGTTTCACTGGCGTTGGTGGGAATGCTATCCAATTTGCACAGCGGTGCAAGCACGTGATCGCGATTGATATTGATCCGTTGAAGATTGATTATGCTAGGCATAATGCTTCTATTTATGGGGTAGATAATCAAATTGACTTCATAATGGGTGACTTTTTCCTCTTGGCGCCAAAATATACACTGTTCAATGTTGCTAAGGAAATTGCTTCCAGAGTTGTCATGTTCCTTCCAAGAAATATCAATTTCAACCAATTNGCAGAGTTATCTCTATCCGCCTGTCCACCATGGTCGCTAGAGCTTAATCTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00164	276275	282794	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14292	TGS1	EC:2.1.1.-	RNA transport	map03013

Gene Ontology

biological_process

GO:0001510 RNA methylation

GO:0009452 7-methylguanosine RNA capping

molecular_function

GO:0005515 protein binding

GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000164s00014505.1	PF00397.21	WW	218	245	1.00E-05
Glyur000164s00014505.1	PF09445.5	Methyltransf_15	461	521	2.20E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.072
SRR1783600	control	3.139
SRR1783602	moderate drought stress	3.585
SRR1811619	moderate drought stress	3.730

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.112
DRR006520	Root Summer glycyrrhizin high producing strain	3.941
DRR006521	Root Winter glycyrrhizin high producing strain	7.159
DRR006522	Root Winter glycyrrhizin high producing strain	7.061
DRR006523	Root Summer glycyrrhizin low producing strain	5.605
DRR006524	Root Summer glycyrrhizin low producing strain	5.335
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.454
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.389

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.501
SRR2868004	Drought Stress (root)	8.799
SRR2967015	Control (root)	10.896

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.616
SRR9715740	Leaf	3.047
SRR9715741	Leaf	2.572
SRR9715739	Root	0.892
SRR9715742	Root	4.105
SRR9715743	Root	4.697

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.856
SRR8749028	MeJA induced 9h	35.267
SRR8749029	MeJA induced 9h	35.927
SRR8749030	Uninduced	7.815
SRR8749031	Uninduced	11.426
SRR8749032	Uninduced	20.224

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.692
SRR8400027	Control - Root	6.941