Gene detail

Gene detail information of Glyur000164s00014502.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G09890.1	0	Protein kinase family protein
NR	XP_007160854.1	0	hypothetical protein PHAVU_001G022300g [Phaseolus vulgaris]
COG	YP_007203500.1	4.00E-21	serine/threonine protein kinase [Singulisphaera acidiphila DSM 18658]
Swissprot	tr\|F4J6F6\|IREH1_ARATH	5.00E-76	Probable serine/threonine protein kinase IREH1 {ECO:0000305}
trEMBL	tr\|V7CTY8\|V7CTY8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW32848.1}

Sequence

Transcript Sequence

>Glyur000164s00014502.1
ATCGGGTCATTGACTATCGTGTAACCGATTATTAAAAGACAAATCCCTCTGTATTTTTTCCAAGAGAATTAATAAAAAAAATGATAAAAAGGGAAAGAATGTGAAGAAGAGACAACTCAAGAGTTACAGATAAGACAGCCTTGCTACAGCTTTGAAGCATTTTCTCTTTTTTCCAACTAGTACTACTAGTACTAGTACTATTTCGTTCCCATTCCCAACAACAACAACAACAGCACTCATAGTCGTCGACGACGACGCGCGCTTTCGCTTCGCTTGCACTCTAGCACCTCCTTCACGACACGTCGTTTTGAATTCTCTCTTGGATTGAATATCATCGTCGCAGTCGCCGGCGGATCTCGTCATCGGCGATCGGAATGGACGGTTACGATGGAACCGTGAGGCTCGGAGCCATCAACCTGAAGTACGATCGCGGCGATTTTGACTCCGGTTCCGATGTGTCGGTTTCCTCTCCGGTTACAAAACAGAAAGCCGCTGCCGCCAAACAATTCATCGAGAATCATTACAAGAACTATCTCCAAGGATTGCAGGATCGCAAAGACAGACGCAGAGCGCTTCAAAGGAAAGTGCAGGATTCTCAAATATCAGTGGAAGAGCAGGAGGCAATGATGAGGAATTTGGAGAGGCGAGAAACTGAGTACATGAGGCTTCAGAGACGTAAAATTGGAATTGATGACTTCGAGCAATTAACAGTAATTGGTAAAGGTGCTTTTGGTGAGGTGAGGTTATGTCGTGCTAAAAGTACAGGAGAGATTTTTGCCATGAAGAAATTGAAGAAGTCAGAGATGCTTAGCCGTGGACAGGTGGAACATGTACGATCTGAGAGGAACTTGCTGGCAGAGGTTGATAGTAGATGCATAGTAAAACTTCATTATTCATTCCAAGATTCAGATTTCCTATATCTCATCATGGAATATTTACCTGGTGGTGACATTATGACGTTGTTAATGAGAGAAGATATTCTTTCNGAAGATGTTGCTCGCTTCTACATTGCTGAAAGCATTCTTGCTATCCAGTCAATACATCACCACAACTACGTACACAGGGATATAAAACCAGATAACCTGATACTGGATAAAAATGGGCATTTGAAGCTTTCAGACTTCGGCTTATGTAAGCCTCTCGATGATAAGTATTCAACAATTTTATTGGAAAATGAAGATCTTACCGGTCAAGAATCAACTAGCGAAACTGAAGGATATTCTGTCTCCCCTTGGTTGATGCCAAAAGAACAATTACAACAGTGGAAACGTAACCGCCGTGCATTGGCATATTCAACTGTTGGAACTCTTGATTATATGGCACCCGAAGTTCTGCTCAAGAAGGGATATGGAATAGAATGTGATTGGTGGTCTCTTGGGGCAATCATGTATGAGATGCTTATTGGGTATCCTCCATTTTGTTCTGATGATCCAAGAATGACCTGCCGTAAGATTGTTAACTGGAAAACATGCCTGAAATTCCCCGAAGAACCCAGGATATCAGCTGAAGCTAAGGACCTGATCTGTCNCTTACTATGTGATGTTGACACAAGACTAGGAACCAGAGGAGTAGAAGAAATTAAGGCTCATCCATGGTTCAAGTATATTCAGTGGGACATGCTTTATGAAATGGAAGCAGCATATAAACCTACAGTCACTGGAGACTTGGACACACAAAACTTTGAGAAGTTTCCTGATGTAGATGGCCCACCATCCGAAACAGCAACTGTAGGACCTTGGCGAAAGATGTTGACTTCCAAAGATACTAATTTCATAGGATATACTTATAAGAAGTCGGACATCCTTAAATCGCTTGGAAGTTCAGATGCAGATATCAGAGTAAATGGATCATCAAAAGCCCCTTCCTTGATTTCATTGCTAGGTCGGATTGATTTGCAAGATACTGTCATTTCAGAAAGTGAGCAGAAGCCAGAAATTTGAATCAGATCAACTTCCTTGTTATGCTTTTACTGGNTCCTGTATTCTATTAATTAAAGCTTGGCATTTGAAGATTGTAGATGACTGAATCAATGTTAGCAAGCATATTCATAATACAGGCAAGACTGGAGTTGGAGTAAGGTCATGAAATCATGGGGGAGTTAATACCACGTCACTCAGTTCTACTGCTTTCAGCGCTCTCAAACGATGATTGTATTGGCATGAAGTCAAACCTGTTCTGTTCATATAAAGTTCCATTTCCGTCACGTGAAAAAATTTTGGCTCTCATTTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00164	262144	270316	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0004674 protein serine/threonine kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000164s00014502.1	PF00069.20	Pkinase	109	408	1.50E-61
Glyur000164s00014502.1	PF00433.19	Pkinase_C	427	473	0.00043

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.979
SRR1783600	control	25.796
SRR1783602	moderate drought stress	25.567
SRR1811619	moderate drought stress	25.240

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.070
DRR006520	Root Summer glycyrrhizin high producing strain	18.135
DRR006521	Root Winter glycyrrhizin high producing strain	50.529
DRR006522	Root Winter glycyrrhizin high producing strain	48.710
DRR006523	Root Summer glycyrrhizin low producing strain	22.799
DRR006524	Root Summer glycyrrhizin low producing strain	22.584
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.276
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.336

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	43.240
SRR2868004	Drought Stress (root)	33.872
SRR2967015	Control (root)	39.342

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.741
SRR9715740	Leaf	11.169
SRR9715741	Leaf	16.110
SRR9715739	Root	2.368
SRR9715742	Root	16.094
SRR9715743	Root	12.933

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	57.937
SRR8749028	MeJA induced 9h	48.873
SRR8749029	MeJA induced 9h	61.613
SRR8749030	Uninduced	54.000
SRR8749031	Uninduced	46.528
SRR8749032	Uninduced	43.697

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.569
SRR8400027	Control - Root	27.369