Gene detail

Gene detail information of Glyur000164s00014493

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G42890.1	3.00E-51	sterol carrier protein 2
NR	XP_004499058.1	1.82E-72	PREDICTED: non-specific lipid-transfer protein-like [Cicer arietinum]
COG	YP_002492031.1	6.00E-09	Sterol-binding domain-containing protein [Anaeromyxobacter dehalogenans 2CP-1]
trEMBL	tr\|C6T1B1\|C6T1B1_SOYBN	2.00E-72	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G09100.1}

Sequence

Transcript Sequence

>Glyur000164s00014493.1
CCTATGCTATAAACTTCTTATTGACAAAAAAAAAAGCGTTGGTTGTTGTTGTTGTTTTTTTTTTTTAGTGAAAAAAAACTCAAGTGTCAAGACATACCGTAACGCAACGAGAAAACAACGAAAGATTATAAAATTAAAAAGAGAAGTTACTGGAGGATCGAGAACAGAAAGACAGAGAGGGGAAGCCATGGCTGATTCGTCGAACCTAAAATCATATACCATAATGGAGCTGATGAAGCAGCATCTCTCCACCGACGCTGGCAAAGAGCTCGTCAAAAAGATTGGTCTCGTTTATCAGATTCAAGTTGCTCCTAAGAAAATTGGAGTCGACGAAGTCACCTACACCATTGATCTCAAGAAAGGAGAGGTCACCAAAGGGCCATATGNAGGTGGGAAGCCTGATGCATCTTTTTCATTTAAGGATGAGGACTTTGTTCAGGTTGCATTGGGGAAGATGAATCCACAGATTGCTTTCATGAGGGGTGCAATGAAGATTAAGGGAAGTTTGAGTGCTGCGCAGAAATTTACTCCGGATATCTTCCCAAAGCCTTCCAAGATGTGAGCAGAGATGTCTGCGACCACAACAATCAAGCAAAACAAATAACCTCAAAAGCTGAGTAGTATCTCTGTAGTTAATACATCGATCATCATTCCTAAGGTTATAGCTTATAGGGAGTTCATGAGAATATGGTTCTGGAATCTGAAGGATATAGTTAGTGTTCTGCGAATCTGCCATATGATTTTATTTACTGTAATTGGATGCTTCAAGTTCGAAAATAATTCATCGTGCATTATTTAGATCTATCTTTCTTAACATTCTTTTTGCCATTAATACTTGTATCAATGCATCTCTGAGCCTATCATGAAAGCCCATACTTGTGAATGCTAGAAATNGTATTTTCTCTTTTTGGTTTCTTTTTTCCAGTTAATTGTTTACTTTATTTNTTTTTATCGTGTGTCTATGCCCTGCATAGGGGATTCATCTTTTGCCAGAGTAACGTTTCTTACCCAATCACTAGCCGCAAGCCCACATCTGCATAAGGGATTAAGTGTGTTCCTATTTGAGTGTAATTAATTCCTGTTAACATTTTTTTAAAGTCGAATTCTGTTGTCAACATCTATGCAGTTGTATTCTATTGTGACCTAGGTGTTGATAAAGATAACTAGCAGCACTCCTTGCATGTCTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00164	200955	203574	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000164s00014493.1	PF02036.12	SCP2	16	114	2.20E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	39.160
SRR1783600	control	39.544
SRR1783602	moderate drought stress	25.502
SRR1811619	moderate drought stress	25.906

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.953
DRR006520	Root Summer glycyrrhizin high producing strain	43.695
DRR006521	Root Winter glycyrrhizin high producing strain	70.839
DRR006522	Root Winter glycyrrhizin high producing strain	72.861
DRR006523	Root Summer glycyrrhizin low producing strain	32.372
DRR006524	Root Summer glycyrrhizin low producing strain	31.473
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.120
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.231

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.530
SRR2868004	Drought Stress (root)	48.456
SRR2967015	Control (root)	38.034

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	58.113
SRR9715740	Leaf	92.191
SRR9715741	Leaf	52.256
SRR9715739	Root	12.714
SRR9715742	Root	22.519
SRR9715743	Root	18.206

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	115.192
SRR8749028	MeJA induced 9h	83.033
SRR8749029	MeJA induced 9h	117.867
SRR8749030	Uninduced	84.307
SRR8749031	Uninduced	91.287
SRR8749032	Uninduced	74.780

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	114.257
SRR8400027	Control - Root	113.988