Gene detail

Gene detail information of Glyur000164s00014492.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25000.1	2.00E-57	alpha-amylase-like
NR	XP_004499064.1	7.27E-138	PREDICTED: alpha-amylase-like isoform X2 [Cicer arietinum]
COG	YP_003951996.1	2.00E-37	alpha-amylase [Stigmatella aurantiaca DW4/3-1]
Swissprot	tr\|P17859\|AMYA_VIGMU	3.00E-103	Alpha-amylase (Precursor)
trEMBL	tr\|A0A067KBX0\|A0A067KBX0_JATCU	4.00E-129	Uncharacterized protein {ECO:0000313\|EMBL:KDP29720.1}

Sequence

Transcript Sequence

>Glyur000164s00014492.1
CGCAGAAGCACTTAGCACCAATACACACATTTGAAGCAATGGATTCCCTCCCTTCTTGCCTCACTCTTTTTTGCCTTTGCCTTTCTTCACTCTTTCTTCAATTCGCTTCCCCTGCCTTGCTGTTTCAGGGGTTCAACTGGGAATCAAGTAGCAAAGGGGGATGGTACAACTCGCTGAAGAACACCATTCCTGACCTATCAAATGCAGGAATTACCCATGTTTGGCTCCCTCCTCCCTCTCAATCTGCTGCTCCTCAAGGAAGGCTATATGATCTTGATGCATCAAAGTTTGGTTCCAAGGATGAACTCAAGTCCCTAATTGCGGCTTTCCATGAAAAAGGAATCAAGTGCCTNGCAGACATAGTCATCAACCATAGAACTGCAGAGAGGAAAGACGGGAGAGGCATCTATTGCCTCTTCGAAGGTGGCACCCCAGATGCACTTGGGGAGAATTGGAACTCTCTCTCTATTGGACAGGATGGGAAGCCTAACTTTAACCAAGATGGTGCTCGTGGTGAACTGGTTAATTGGGTTGAATCTGCTGGTGGTGCTGTCAATGCCTTTGATTTCACTACCAAAGGGATTCTTCAAGTTGCTGTACAAGGGGAACTGTGGAGGTTGAAGGACTCAAATGGAAAGCCACCTGGAATGATTGGTGTGAAACCAGAAAATGCTGTGACCTTTATTGACAACCATGACACTGGCTCCACTCAGCATCTTTGGCCATTCCCATCTAACAAATTCTACGACCACTTTTTTGATTGGGGGCTGAAGGAGGAGATAGCAAAATTGAGTGCCATAAGAGTGAGGAATGGGATCAATATGAAAAGCAACGTGAACATTCTGGCANCTGATGGTGACCTTTATGTAGCAAAGATAGACAACAAGATCATCGTGAAGATAGGGCCAAAGATGGACCTTGGAAATCTTATTCCCTCAAATTTCCGCGTAGCTACCTCTGGCCAAGACTATGCCGTGTGGGANTGATCACTAAAATTGAGTACAATAAAGAATATTGATTTGATCTTTATCATAAACTATATATCATGTCANAACACAGTGTAAGATGATCATTTTGTATCCTGTTCTACTCGTTTCATGAATACAAGTATAAAATAGCATCCCCTGATATTGTACACAAGATGATTATAAGATGATGGTATTTACTAAGAGACAAATTACATCAATGCGTGACAAAAGATAAAAACACAAATCATTGGAAAAGACAAAAATGGAAGAGCCAAGGAAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00164	196271	198773	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH13

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01176	AMY, amyA, malS	EC:3.2.1.1	Starch and sucrose metabolism	map00500
			Carbohydrate digestion and absorption	map04973

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004556 alpha-amylase activity

GO:0005509 calcium ion binding

GO:0043169 cation binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000164s00014492.1	PF00128.19	Alpha-amylase	46	118	3.30E-10
Glyur000164s00014492.1	PF07821.7	Alpha-amyl_C2	257	314	1.80E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.423
SRR1783600	control	4.214
SRR1783602	moderate drought stress	5.354
SRR1811619	moderate drought stress	4.892

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.593
DRR006520	Root Summer glycyrrhizin high producing strain	5.850
DRR006521	Root Winter glycyrrhizin high producing strain	2.699
DRR006522	Root Winter glycyrrhizin high producing strain	2.502
DRR006523	Root Summer glycyrrhizin low producing strain	33.244
DRR006524	Root Summer glycyrrhizin low producing strain	33.042
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.089
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.002
SRR2868004	Drought Stress (root)	1.441
SRR2967015	Control (root)	1.018

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.922
SRR9715740	Leaf	23.570
SRR9715741	Leaf	11.062
SRR9715739	Root	7.530
SRR9715742	Root	3.742
SRR9715743	Root	4.108

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.770
SRR8749028	MeJA induced 9h	34.797
SRR8749029	MeJA induced 9h	12.555
SRR8749030	Uninduced	3.568
SRR8749031	Uninduced	2.460
SRR8749032	Uninduced	2.164

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.093
SRR8400027	Control - Root	3.998