Gene detail information of Glyur000164s00014488 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G53390.1 | 4.00E-160 | O-acyltransferase (WSD1-like) family protein |
| NR | XP_003588522.1 | 0 | O-acyltransferase WSD1 [Medicago truncatula] |
| COG | YP_001277083.1 | 5.00E-29 | hypothetical protein RoseRS_2761 [Roseiflexus sp. RS-1] |
| Swissprot | tr|Q93ZR6|WSD1_ARATH | 1.00E-138 | O-acyltransferase WSD1 |
| trEMBL | tr|G7I4A5|G7I4A5_MEDTR | 0 | O-acyltransferase (WSD1-like) family protein {ECO:0000313|EMBL:AES58773.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00164 | 169532 | 174974 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000164s00014488.1 | PF03007.11 | WES_acyltransf | 53 | 255 | 3.10E-12 |
| Glyur000164s00014488.1 | PF06974.8 | DUF1298 | 319 | 467 | 3.00E-69 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.203 |
| SRR1783600 | control | 4.121 |
| SRR1783602 | moderate drought stress | 4.932 |
| SRR1811619 | moderate drought stress | 4.864 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.907 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.916 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.247 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.322 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.636 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.404 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.279 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.322 |
| SRR2868004 | Drought Stress (root) | 18.904 |
| SRR2967015 | Control (root) | 16.594 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.361 |
| SRR9715740 | Leaf | 13.679 |
| SRR9715741 | Leaf | 11.516 |
| SRR9715739 | Root | 3.124 |
| SRR9715742 | Root | 4.497 |
| SRR9715743 | Root | 4.358 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.514 |
| SRR8749028 | MeJA induced 9h | 8.614 |
| SRR8749029 | MeJA induced 9h | 6.602 |
| SRR8749030 | Uninduced | 10.505 |
| SRR8749031 | Uninduced | 11.353 |
| SRR8749032 | Uninduced | 5.791 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.754 |
| SRR8400027 | Control - Root | 10.026 |