Gene detail

Gene detail information of Glyur000164s00014486

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G53370.1	0	pectin methylesterase PCR fragment F
NR	XP_004498516.1	0	PREDICTED: probable pectinesterase/pectinesterase inhibitor 34-like [Cicer arietinum]
COG	YP_006407803.1	5.00E-49	pectin methylesterase [Belliella baltica DSM 15883]
Swissprot	tr\|Q9FK05\|PME61_ARATH	0	Pectinesterase 61
trEMBL	tr\|G7I4A4\|G7I4A4_MEDTR	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}

Sequence

Transcript Sequence

>Glyur000164s00014486.1
GCCTCAATGATCCATTTATATTCCAGTGGGCATATGCAATGCTGAATGATCAGTATAAGTAGCCAGCTAATTCCTTCGATGTCGACTTCACACCAAACCTTGCGTTTTTTCACATCACTATAACACTAACACACTTAACTTGCATAACTCACTCTCTCTCACTGCTCTTTAAAGCACTAGCAAAACCTTACCCCTTTACTAACTAATCAATAGAAACCAATAACAACAACAACCACCTCTCTTCCCCACTCTCTCTCTCTCTCTCTCTCTCTCTCACATTCACTCACATCACATTACAAAGAACAATGGACTTGGAAAGGCTTGGACCCTCCGACCCCGGAGGTTCCTCCCGTCGCTCCACCGCACCTCTCACCAAATCAACCACCACCGATTCCTCATCCTCCGTGAGTAAAAAGAAAATCATCATGCTCTCCACACTCGCCACCGTCTTAATTGTCGCCTCCGCCGTCTCCGCCGCTCTAATAACNGTCACCCGCTCCCGAGCCTCCGCCAACAACAATCAAAACACTCCGAACCTCCGCGCCAAGCCGACCCAGGCAATNTCCCGAACCTGCAGCAAGACACGCTTCCCAACCCTCTGCATCAATTCCCTCCTCGACTTCCCTGGCTCAACAACCGCCTCCGAGCAGGACCTCGTCCACATCTCCTTCAACATGACCCTCCGCCACGTCAGCAAGGCATTCTATGCCTCATCCGGTCTCTCCTACGCCACCGGCGCGCACCCGCGTGTCCGCGCTGCATACGAGGACTGCCTCGAGCTCCTCGACGAGTCCATGGATGCGCTCGCCCGCTCGCTGTCCTCGGTGACGTCCCGTGGCGGGGACAGTGAGATCGGACCACTCACATCCACCGCGGGATCGACCGAGGACGTGATGACGTGGCTCAGTGCCGCGCTCACTAACCAGGACACGTGTCTGGAAGGATTCGAGGACACGAGCGGGACCGTTAAGGACCAGATGGTTGGTAATTTGAAGGACTTGTCTGAACTCGTGAGCAATTGTCTCGCGATATTCTCGGCGACAGGAAACGGGGATTTCTCCGGAGTGCCGATACAGAATAGGAGACGGTTAATGGGAAAGGAATCAAAGGATAGTGTTATCGGCGATTTCTCGCGGGGATTCCCGAAATGGCTGAAAAAACGAGATAGGAGATTGTTGAGTTTACCCGTATCGGCGCTACAAGCCGATATAATCGTTTCCAAGAGCGGTAACGGTACGGTGAAGACAATCGCTGAGGCGATTAAAAAGGCGCCAGAGCATAGTAGCCGCCGGTTCATAATCTACGTGAGGGCAGGAAGGTACGAAGAGAATAATTTAAAGGTGGGAAAAAAGAAAACTAATATTATGTTCATAGGAGACGGAAAGGGCAAAACTGTCATTACGGGGAAAAGGAATGTTGCCGATGGCCTGACCACTTTCCATACCGCATCCTTCGCTGCTAGTGGTCCTGGGTTCATTGCACGTGACATCACGTTCGAGAACTATGCCGGACCGGCGAAGCACCAAGCGGTGGCGCTCCGTGTCGGATCGGATCACGCGGTGGTGTTCCGCTGCGACATCTTGGGGTTCCAAGACTCGTGCTATGTTCACTCCAACCGTCAATTCTTCCGCGAGTGCAACATTTACGGCACCGTGGACTTCATATTCGGCAACGCCGCAGTGGTTTTCCAAAAGTGCAACCTTTACGCACGCAAGCCCATGGCCCAACAGAAGAACACCATCACGGCCCAAAACAGGAAAGACCCAAATCAGAACACGGGTATATCCATCCACGACTGTCGGATCCTACCCGCCCCGGAACTCGCCCCGGTGAAGGGCAGCATCCCAACCTATCTGGGCCGTCCATGGAAAATGTATTCCAGAACAGTGTACTTGTTGTCCTACATGGGTGATCACGTGAACCCACAAGGGTGGTTGGAGTGGAATGGGGACTTTGCATTGGACACATTGTATTATGGTGAGTACATGAATTATGGGCCGGGTGCAGCCGTTGGGNAACGGGTCAAATGGCCCGGGTACCGGGTCATTACTTCTACGGTGGAGGCCGATAGATTCACGGTGGCCCAATTCATATCCGGCTCGTCGTGGTTACCNTCCACCGGGGTGGCGTTTTTGGCCGGGTTATCCACCTGAATATGAATTCAACTGCAGGTATATAAATATATATGGAGGCTTGACAGTACTCTTACCCAATTGGGGGAATGGCTTCTATTTTCATAGTTGTTATTTTGTTTTAATTGTGCCAAAAATATAGGGTTTTTGGGCCTAATTTATTTTACCAATAATGCTGATAATAATTATGAAGTTGTAATCAGGCTTTATATAATATAGGTCTTGTAATTTTTCCCCTGCCTCAAAGTCAAATGTGTTATAGTTGATCTACCAAAAAAAATGTGTTATAGTTGACTTAAGAATTTTCTGTGCCATTTTCATTTCATTGATATAAATGAATAAGAAAGAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00164	140123	144336	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0042545 cell wall modification

cellular_component
GO:0005618 cell wall

molecular_function

GO:0004857 enzyme inhibitor activity

GO:0030599 pectinesterase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000164s00014486.1	PF04043.10	PMEI	85	242	4.90E-35
Glyur000164s00014486.1	PF01095.14	Pectinesterase	301	598	7.00E-143

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	38.406
SRR1783600	control	38.533
SRR1783602	moderate drought stress	24.138
SRR1811619	moderate drought stress	24.065

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	48.371
DRR006520	Root Summer glycyrrhizin high producing strain	48.619
DRR006521	Root Winter glycyrrhizin high producing strain	1.478
DRR006522	Root Winter glycyrrhizin high producing strain	1.444
DRR006523	Root Summer glycyrrhizin low producing strain	26.784
DRR006524	Root Summer glycyrrhizin low producing strain	26.858
DRR006525	Leaf Summer glycyrrhizin high producing strain	39.370
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.850

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	66.829
SRR2868004	Drought Stress (root)	61.769
SRR2967015	Control (root)	44.765

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	44.416
SRR9715740	Leaf	18.122
SRR9715741	Leaf	33.919
SRR9715739	Root	27.347
SRR9715742	Root	101.072
SRR9715743	Root	87.694

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.720
SRR8749028	MeJA induced 9h	4.888
SRR8749029	MeJA induced 9h	5.640
SRR8749030	Uninduced	1.562
SRR8749031	Uninduced	0.479
SRR8749032	Uninduced	4.049

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.458
SRR8400027	Control - Root	50.945