Gene detail

Gene detail information of Glyur000164s00014482

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G24280.1	0	gamma-irradiation and mitomycin c induced 1
NR	XP_004498513.1	0	PREDICTED: uncharacterized protein LOC101490815 [Cicer arietinum]
Swissprot	tr\|Q94A79\|DMS3_ARATH	4.00E-53	Protein DEFECTIVE IN MERISTEM SILENCING 3
trEMBL	tr\|G7I3I1\|G7I3I1_MEDTR	0	Gamma-irradiation and mitomycin C induced protein, putative {ECO:0000313\|EMBL:AES58766.2}

Sequence

Transcript Sequence

>Glyur000164s00014482.1
AGTGGAAGCATGGAAAGGGAAGTGGTTAATAACAACCCGAAAAGGAGGAAAGTGGTGCTAAGTGACAGTGAGGATGGTGATGATATTGCAAAGGCGCGGAGGTTTAAAATTTTATTACCGAACGGGACGAGTGTGGAATTGACATTGAGGGATCCCAAAACTGAAATGCCTTNCGGGGATTTTATTGGCTTAGTTCGAAAAAAATACTTGGAAGCTCGTAAGCTCAATGATTCGATGAAGAAGAAACGGGACATTAATTGGGAGGGTGGTGCTCTGTTTCTTCAGGATGCCACTGATGCTAAGATTAGGAACGTTATCAAATTTAAAAACTACGATCCTCACAAGTGCCATATTTTACGCCTTCTTGATGGGAGTAGTGATGTTGCTAAAACGTTTGAGAATATGTGGGATTTGACACCAGATACAGATCTGCTACTCGAGCTTCCTGAAGAATATACTTTTGAAACGGCTCTTGCAGACTTGATTGATAATTCCTTGCAAGCGGTATGGTCTAATGGGGAAAATAATAGTAAGCTAATTAGAGTAAATGTGGATAAAGATCAGATTTCGATTTTCGACAACGGTCCTGGGATGGATGACTCTGACGAGAATTCCCTAGTAAAATGGGGGAAAATGGGCGCTTCACTTCACCGATCATCAAAATCACAGGCTATCGGAGGAAAACCTCCATACTTAATGCCTTATTTTGGAATGTTTGGGTATGGTGCAGCTATAGCATCTATGCATTTGGGGAGGCGTGCTTCTGTTTCTTCTAAGACACAACAAGTAAAGAAAGTCTACGTGTTACTTCTTGAGAGAGAAGCTTTGTTAAGTACATCTACCTCTAATGTCACNTGGAAGACAAGAGGTGCCATTAGGAATCCCTTAAAGGATGAACTCAGTGTCTCTCATGGGAGCTTCACAAAGTGCCGCCTTAAGGACATATATTTCCCGTACATTCAGTGCGACGACCTGTCTGACAGTGGGAAGACTATTACCCCAGTCGAGTTTCAGGTAAACGGTGTTAATCTTACTGAAATTCAAGGTGGTGAGGTTGCAATCACCAATTTGCATTCTTGCAATGGTCCCGAATTTGTTTTGCAGCTTCATCTTTCCTTACTCCCCGACCATGGTTCAAAAGAATTTAAAAATGCAAATGCACGCTTGAGGGTTGTATATTTCCCGTTCACAGAGGGAAAGGAGAATATTGAGAGGGTTTTGGAAAAACTAATGGCTGATGGTTGTGTAATAAGGGAAAACTTCCAAAGCTTTTTCCGTGTCTCTGTTAGGCGGCTTGGTCGTCTGCTTCCAGAGGCTCGCTGGACTTTACTTCCTTTTATGGACTTTAGGAACAAAAAGGGAAATAAGGCTAACATACTGAAGAGATGTTCCTCGAGGGTGAAATGCTTCATTGAAACTGATGCTGGNTTTAAGCCAACACAGTCCAAGGTTAGTCTTGCATCCTTTACTATCCCGACCTCTGTTCTTAAGGGATTTGATTTCATTTGGTTTTCGACTACTTCTGAAACCGATCTAGCGCACCACAATCCTTTCACCGTTGCTTTGAAGAATTTGGGAAACAAAATTTCGGATAAAGAGAAGAATGTTATTGTTGAAATTCGCAAGGCTACAAAACTGTTAACTCCTTTACAGCTAGAAAAGGAGTACCAGGATTGGATTTTAGAAATGCATCGTCAGTATGATGAAGAAGCTGATTCTGGTGAGGATCAGCCGGTTATTATTGTCAGTCCAGCAAACAAAAAAGCACTAGGGATTTCCTCCGATGTCGTTAGAGTTCATCGGGTACTGAGGAGAAAGGATAAATGTTGGAAGCATGGGCAGAGAATTAAAGTGTTAAAGGGAGCATGTGCAGGGTGTCATAAAACCAATGTTTATGCCACCCTAGAGTACTTTTTGCTTGAAGGATTTGGAGGAGACGCTGGTGGTGAAGCTCGCATCATATGCAGGCCAATAGATATCCCAGATGAGAATGGATGTTCCCTCTCTGTCAGTGATAAGGGTGCAAGTTTGAATATTGGTGGCTCTTTGTCCTTACCGATAAGCGTGATCGACTATGGAAAGCTTGTAGCTGTTGAAAGTATTGAATGGGACAATCGACTTTACAAGAGACAACAGAAATCTCCTTCCTCTATTGACTCGCCGAGTCCAAACCATTATAAACGACTAGAGGTTGATGGGATGGACTTGAACAAAAAATGTTTTGAGAAAACAGTGACCGTGAGGCCTTCTCATTGTGCTGGGAAGTATAGACTTCTGACTGATGACCAGAGTCAACAGCTAGATGTAAGGGTTGGTTCTAGCTTTCCAACCTTAGCCATTGCATGNTACGACGTCCATGATAATCAAGCACCTTTTCAAACAATTCCGGATNTGACCGTCAAAATTCAGGCAGCTAAAGACTTGTACTTTGATGTACATGGAATGAAGATTGGGCTTTCAACTGACAAAATGATTTTTAAAATAATGGATGCAATGGTCACAAGTAATGAACTGGACAAGATAAGGCCCAGCTACAAAACCACTCTGATTNTTGCTTCAAATAGTGTACCGATGTCGCTTTCCGTTCCATGTCGAGTTTATCCAGGTTTTCTTGAACATGTTCAACTAAAGCCTAAAATAACAGAAGACGAACTATTTCCAGGTTTCATTTTCAAAGAGTTAATGTTGGAGGTGAATGATAAAGGACAAATTAATCTTGGTGGTCTACTGAAGTTAACAGCAGGTTATGGAGAAATTGTTTTCAAGCAGGAGTTCTCAACTGTGAGAAGAATCTTGAGAATTGCATCAGAGGTGCCTGATTCTTGTGCTGCTGGTGGTNACTTGGAAAACATCGATTTTGAAATTGTTAAACCTGATGGAGATGTAGATACAAAGATTCATCACAGTGATCAAGATCACCAGTTTCATATGCTTACAATTAAGTCAGACTTTTTCAGCACGGAGGAATTGATCCGGTATACTTTCAAGCATGGGCGATGTACCATCCCATCAATACGTGTTCCAGTGATTATCGGGACTTTCTGCTTTGAAGCTTGTCACTCACAATATACAGAGCTATGTCTGACTGTAAAGGTTCGAGTTGTCAAAATGGCAAATGTGAAATCGGTTGGCCAACCTCTAACTCCGGATAAGAGTATCATACCCATGCAGGAACTATCATCATTTGATCATGAAAATAATTTAATGATGATGTCCATCATAAATAATGATGACAAGGAACTTGGTGACATTCTTAGACTTGGTGAGAAAATTAAAAAACTAGAAAAATATCTTGTTGATTGTCATGAGCAAAAGACTGAGACTGAGAAAGAGATGTTGAAGCTGCTAGATAAGGTTCAACTTTATCGATTAGGCAATCTGGACTCTCAGTTCACAAAAGACGAAATGACTACAAAAATAAAAAGNTTGGAAAACTCAGCAGCTTCTGTCGTGTGTAATCTTTCCACACACAAAAAGCAACAGAATTATTTTATGGAAGATATAATCGGGGTAGTTGCACTGCTTGGTTCTGTTCAGAGTCCTGAGCTTAGCAGAGTGTTGGCAGAGTATCTGGGTGAAGATAAAATGCTGGGTGTTATTTGTAGATCTTTTNACACTGCAAGTTCTCTTGAGAGGTATAAACAAAATGGGGAAATCGATTGTATGCGTGCTTTACATGCTGAAGCAGCTGCTCTAGGAAAAGCTATCAGCAAGCGGCCTTACACTGGTTTTTCGCAAGAAAATGACTCTCAGAGGAAGCTAGCATTGCCCGATCCTACATTACCAAATGGAAGAATTCCAGCAGGTTTTATGGGTTATGCAGTTAATATGGTTGACCTTGACATCAATCACTTGCAGACGAGGACACCTTTAGGCCATGGGCTTCGGGAGACAGTACTGTTTAGCCTTTTCAAAAAGCTCCATGTTTATAAATCAAGAGAGAATATGATGGCTGCTCGTGCTTGTATTGACCATGGCGCTGTNTCGTTAGATGGTGGTATTATACGAGAAAATGGAATTCTTTCTCTTGGCGATGGGAACCCTTCTATATGTTTTCCTTGTCTGAACAAGATGGATGTCTCTCCAGAAGCTGAGGAAATATTGACACAGATTGAAGGAATGAAGGCATATCTGAGGAAGATTGAAGAAAATATCAGTGAAGTGACTAAACGTCTCAAGAAGAATTTAAAGAAGTTTGAGAAAAAAAAGGAAAGATATAGTAAGCTTATGGATAGAATTGAGCCGATGACGGAAGTATTGGAATATAAACCNGAGACAGGGTCAAGTCAAAAATGTCCGTGCCGAAAATGA

Protein Sequence

>Glyur000164s00014482.1
SGSMEREVVNNNPKRRKVVLSDSEDGDDIAKARRFKILLPNGTSVELTLRDPKTEMPXGDFIGLVRKKYLEARKLNDSMKKKRDINWEGGALFLQDATDAKIRNVIKFKNYDPHKCHILRLLDGSSDVAKTFENMWDLTPDTDLLLELPEEYTFETALADLIDNSLQAVWSNGENNSKLIRVNVDKDQISIFDNGPGMDDSDENSLVKWGKMGASLHRSSKSQAIGGKPPYLMPYFGMFGYGAAIASMHLGRRASVSSKTQQVKKVYVLLLEREALLSTSTSNVTWKTRGAIRNPLKDELSVSHGSFTKCRLKDIYFPYIQCDDLSDSGKTITPVEFQVNGVNLTEIQGGEVAITNLHSCNGPEFVLQLHLSLLPDHGSKEFKNANARLRVVYFPFTEGKENIERVLEKLMADGCVIRENFQSFFRVSVRRLGRLLPEARWTLLPFMDFRNKKGNKANILKRCSSRVKCFIETDAGFKPTQSKVSLASFTIPTSVLKGFDFIWFSTTSETDLAHHNPFTVALKNLGNKISDKEKNVIVEIRKATKLLTPLQLEKEYQDWILEMHRQYDEEADSGEDQPVIIVSPANKKALGISSDVVRVHRVLRRKDKCWKHGQRIKVLKGACAGCHKTNVYATLEYFLLEGFGGDAGGEARIICRPIDIPDENGCSLSVSDKGASLNIGGSLSLPISVIDYGKLVAVESIEWDNRLYKRQQKSPSSIDSPSPNHYKRLEVDGMDLNKKCFEKTVTVRPSHCAGKYRLLTDDQSQQLDVRVGSSFPTLAIAXYDVHDNQAPFQTIPDXTVKIQAAKDLYFDVHGMKIGLSTDKMIFKIMDAMVTSNELDKIRPSYKTTLIXASNSVPMSLSVPCRVYPGFLEHVQLKPKITEDELFPGFIFKELMLEVNDKGQINLGGLLKLTAGYGEIVFKQEFSTVRRILRIASEVPDSCAAGGXLENIDFEIVKPDGDVDTKIHHSDQDHQFHMLTIKSDFFSTEELIRYTFKHGRCTIPSIRVPVIIGTFCFEACHSQYTELCLTVKVRVVKMANVKSVGQPLTPDKSIIPMQELSSFDHENNLMMMSIINNDDKELGDILRLGEKIKKLEKYLVDCHEQKTETEKEMLKLLDKVQLYRLGNLDSQFTKDEMTTKIKXLENSAASVVCNLSTHKKQQNYFMEDIIGVVALLGSVQSPELSRVLAEYLGEDKMLGVICRSFXTASSLERYKQNGEIDCMRALHAEAAALGKAISKRPYTGFSQENDSQRKLALPDPTLPNGRIPAGFMGYAVNMVDLDINHLQTRTPLGHGLRETVLFSLFKKLHVYKSRENMMAARACIDHGAVSLDGGIIRENGILSLGDGNPSICFPCLNKMDVSPEAEEILTQIEGMKAYLRKIEENISEVTKRLKKNLKKFEKKKERYSKLMDRIEPMTEVLEYKPETGSSQKCPCRK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00164	101189	118885	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000164s00014482.1	PF13589.1	HATPase_c_3	152	293	4.10E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.000
SRR1783600	control	1.937
SRR1783602	moderate drought stress	2.033
SRR1811619	moderate drought stress	1.999

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.237
DRR006520	Root Summer glycyrrhizin high producing strain	2.164
DRR006521	Root Winter glycyrrhizin high producing strain	1.211
DRR006522	Root Winter glycyrrhizin high producing strain	1.156
DRR006523	Root Summer glycyrrhizin low producing strain	3.648
DRR006524	Root Summer glycyrrhizin low producing strain	3.449
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.599
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.619

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.853
SRR2868004	Drought Stress (root)	0.638
SRR2967015	Control (root)	0.560

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.401
SRR9715740	Leaf	0.390
SRR9715741	Leaf	0.298
SRR9715739	Root	0.252
SRR9715742	Root	0.752
SRR9715743	Root	0.660

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.292
SRR8749028	MeJA induced 9h	2.346
SRR8749029	MeJA induced 9h	1.386
SRR8749030	Uninduced	2.285
SRR8749031	Uninduced	1.202
SRR8749032	Uninduced	1.385

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.861
SRR8400027	Control - Root	3.161