Gene detail

Gene detail information of Glyur000164s00014471.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G24318.2	9.00E-129	O-Glycosyl hydrolases family 17 protein
NR	XP_007137073.1	0	hypothetical protein PHAVU_009G097400g [Phaseolus vulgaris]
Swissprot	tr\|P52409\|E13B_WHEAT	3.00E-117	Glucan endo-1,3-beta-glucosidase (Precursor)
trEMBL	tr\|V7ATS3\|V7ATS3_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW09067.1}

Sequence

Transcript Sequence

>Glyur000164s00014471.1
ATGGAGAAAGCGCCTCTTATATGTGTGGCTTCAATACCAAATGCAATTTTGGTGCTTCTTGCATTAACCTTAATCCAAGAAGTGCAAGGAATTGGTGTTAATTATGGGACGGTAGCAAACAACCTTCCCCCACCAGCTAAAGTTGCAAAATTTCTCTCACAATCCACAACAATCAACCGGGTGAGACTCTTTGATGCCAACCCTGAAATCCTGCAAGCCTTTGCCAACACTGGGATAGAGATCACCATAACCGTCCCCAACGACCAAATCCCCAACATTAGTACCAACCTAACCTTTGCACAACAATGGGTCAAAACCAATGTCCAACCATTCCTCCCTGCCACAAACATCATCAGAATCCTAGTTGGCAACGAAGTCTTGTCCACAGCCAACAAGCTCCTCATCACCAACCTTGTCCCTGCCATGCTGACCCTTCACACTGCCCTCGTGGCAGCCTCATTGGACACCCACATCAAAGTTTCCACACCCCATGCTTTGGGCATTTTATCAAACTCAAACCCACCATCTAGTGCAAGGTTTAGGCAAGGCTATGATACCCATGTGCTCAAACCAATGCTTAGCTTCCTCAAAATTACAAATTCACCCTTTGTTGTTAACCCATACCCCTTTTTCGGATCCTCTCCGGGTACCCTTGATTATGCACTTTTCAGGGCGAATCCAAACTCGGGTGTGTTTGTGTTTGATGATGACACTAGGCTCCAATACACCAACATGTTGGATGCGCAACTCGATGCCGTTTATTCGGCGATGAAGGTTTTGGGCTTTGAGGATGTTGATATTGTTATTGGTGAAACGGGTTGGCCATCGGCTGGTGACCCGGCCCAAGTTGGTGTTGACCCAAGGAGTGCTTCGGAGTACAATGGGAATCTCATACGGCATGTCACTTCTGTGGTGGGCACTCCTCTCATGCCGAATCGGACTTTTGAGACCTACATTTTTGCTTTGTTTGATGAGAATCTGAAGCCCGGTCCAATATGTGAGAGGAATTTTGGGCTTTTCTGGCCCAATATGACTCCTGTATATGATATTCCAATCATAATGAGGAACACTGTGGCTGTTCCTAACAATCATTCTAAGACNTTTTTGTCGATCATGATTGCCTTGGGCTTGATTGGTTCCTGGGCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00164	11564	12844	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17,CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000164s00014471.1	PF00332.13	Glyco_hydro_17	31	350	7.30E-90

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.221
SRR1783600	control	0.224
SRR1783602	moderate drought stress	0.323
SRR1811619	moderate drought stress	0.400

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.125
DRR006520	Root Summer glycyrrhizin high producing strain	0.842
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.658
DRR006524	Root Summer glycyrrhizin low producing strain	0.641
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.262
SRR2868004	Drought Stress (root)	1.703
SRR2967015	Control (root)	1.387

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.342
SRR9715740	Leaf	0.055
SRR9715741	Leaf	0.000
SRR9715739	Root	0.151
SRR9715742	Root	0.410
SRR9715743	Root	0.167

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.073
SRR8749031	Uninduced	0.113
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.552
SRR8400027	Control - Root	0.529