Gene detail information of Glyur000163s00011138 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G10340.1 | 1.00E-151 | phenylalanine ammonia-lyase 4 |
| NR | ACF94716.1 | 0 | phenylalanine ammonia lyase [Robinia pseudoacacia] |
| COG | YP_001865631.1 | 8.00E-42 | phenylalanine/histidine ammonia-lyase [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|P45734|PALY_TRISU | 0 | Phenylalanine ammonia-lyase |
| trEMBL | tr|B6S390|B6S390_ROBPS | 0 | Phenylalanine ammonia-lyase {ECO:0000256|RuleBase:RU003955} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00163 | 290757 | 293928 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10775 | PAL | EC:4.3.1.24 | Phenylalanine metabolism | map00360 |
| Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000163s00011138.1 | PF00221.14 | Lyase_aromatic | 58 | 337 | 1.10E-91 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.267 |
| SRR1783600 | control | 10.351 |
| SRR1783602 | moderate drought stress | 13.403 |
| SRR1811619 | moderate drought stress | 13.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.318 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.193 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.152 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.146 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.929 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.971 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.766 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.867 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 126.572 |
| SRR2868004 | Drought Stress (root) | 354.905 |
| SRR2967015 | Control (root) | 194.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 173.320 |
| SRR9715740 | Leaf | 131.716 |
| SRR9715741 | Leaf | 279.039 |
| SRR9715739 | Root | 37.166 |
| SRR9715742 | Root | 93.768 |
| SRR9715743 | Root | 78.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 43.884 |
| SRR8749028 | MeJA induced 9h | 22.966 |
| SRR8749029 | MeJA induced 9h | 7.863 |
| SRR8749030 | Uninduced | 229.049 |
| SRR8749031 | Uninduced | 57.402 |
| SRR8749032 | Uninduced | 24.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 82.208 |
| SRR8400027 | Control - Root | 81.172 |