Gene detail information of Glyur000163s00011137.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G53260.1 | 3.00E-55 | phenylalanine ammonia-lyase 2 |
| NR | AHL27351.1 | 5.40E-74 | phenylalanine ammonia-lyase, partial [Glycine max] |
| COG | YP_001453914.1 | 6.00E-21 | histidine ammonia-lyase [Citrobacter koseri ATCC BAA-895] |
| Swissprot | tr|P45734|PALY_TRISU | 1.00E-71 | Phenylalanine ammonia-lyase |
| trEMBL | tr|W8P2F3|W8P2F3_GLYSO | 2.00E-74 | Phenylalanine ammonia-lyase {ECO:0000313|EMBL:AHL27363.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00163 | 280693 | 283357 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10775 | PAL | EC:4.3.1.24 | Phenylalanine metabolism | map00360 |
| Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000163s00011137.1 | PF00221.14 | Lyase_aromatic | 10 | 134 | 1.20E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.243 |
| SRR1783600 | control | 2.051 |
| SRR1783602 | moderate drought stress | 2.581 |
| SRR1811619 | moderate drought stress | 2.505 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.172 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.406 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.037 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.097 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.129 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.787 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.754 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.964 |
| SRR2868004 | Drought Stress (root) | 76.478 |
| SRR2967015 | Control (root) | 43.224 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.043 |
| SRR9715740 | Leaf | 8.311 |
| SRR9715741 | Leaf | 41.325 |
| SRR9715739 | Root | 3.611 |
| SRR9715742 | Root | 13.162 |
| SRR9715743 | Root | 11.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.964 |
| SRR8749028 | MeJA induced 9h | 5.852 |
| SRR8749029 | MeJA induced 9h | 1.022 |
| SRR8749030 | Uninduced | 38.021 |
| SRR8749031 | Uninduced | 10.370 |
| SRR8749032 | Uninduced | 3.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.024 |
| SRR8400027 | Control - Root | 16.057 |