Gene detail

Gene detail information of Glyur000163s00011136

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37040.1	0	PHE ammonia lyase 1
NR	ACF94716.1	0	phenylalanine ammonia lyase [Robinia pseudoacacia]
COG	YP_007056096.1	4.00E-82	histidine ammonia-lyase [Rivularia sp. PCC 7116]
Swissprot	tr\|P45734\|PALY_TRISU	0	Phenylalanine ammonia-lyase
trEMBL	tr\|B6S390\|B6S390_ROBPS	0	Phenylalanine ammonia-lyase {ECO:0000256\|RuleBase:RU003955}

Sequence

Transcript Sequence

>Glyur000163s00011136.1
TCNGCTAGCTCTCTCATAACTAACTCCGAATTCATTCATTTTTTTCCCTTCCCAAATTTCCATTCTCTCCAAAGTAGCTGCTACTAGCATTTAATTGTTGAAAGAGTAAGTTGCATTTTATTAACATGGAATTCCAAAACAACAACAACAACAACCAAAATGGATCATCCTTGTGCTTGACGAGCACTACTAACGGTGGCAATAAAGTGAGCAGTGACCCGTTAAATTGGGGTTTGGCGGCGGAGGCAATGAAGGGCAGCCACTTGGATGAGGTGAAACGCATGGTGGCCGAGTACCGCAAGCCGGTGGTCAATCTCGGCGGAGAGACTCTCACCATCTCTCAGGTGGCTGCCATTGCCGCCGCTGCCGACGGCAAAGGCACCGTGAGGGTGGAGCTGTCGGAGTCTGCCAGGGCTGGCGTGAAGGCGAGCAGTGACTGGGTGATGGACAGCATGAACAACGGCACCGACAGTTACGGTGTCACCACCGGCTTCGGTGCCACATCCCACCGCCGAACCAAACAGGGTGGTGCTTTGCAGAAAGAACTCATCAGGTTTTTGAACGCTGGAATATTTGGCAACGGGACAGAGTCATGCCACACGCTGCCACACTCAGCAACAAGAGCTGCCATGCTAGTGAGAATCAACACACTTCTCCAAGGCTACTCAGGCATCAGATTTGAGATCCTAGAAGCCATCACCAAGCTCCTCAACACCAACATCACCCCATGCTTACCCCTCCGTGGCACAATCACTGCCTCTGGAGATTTGGTCCCTCTTTCTTACATTGCTGGTTTGCTCACTGGCAGACCAAACTCCAAAGCTGTGGGACCCTCTGGAGAGCTTCTCAATGCCAAAGAAGCTTTCCAATTGGCTGGCATCAACAATGCTGAGTTCTTTGAATTGCAACCCAAAGAAGGCCTTGCCCTTGTTAATGGCACTGCTGTTGGCTCTGGCTTAGCTTCCATTGTTCTCTTTGAGGCTAACATATTGGCTGTGTTATCCGAAGTCTTATCAGCTATTTTTGCCGAAGTGATGCAAGGGAAGCCTGAATTCACTGACCATTTGACACACAAGTTGAAGCACCACCCTGGCCAGATTGAGGCTGCTGCTATTATGGAACACATTCTGGATGGAAGTTCCTATGTCAAAGAAGCCAAGAAGTTGCATGAGATGGACCCTTTGCAGAAGCCAAAACAAGACAGGTATGCACTTAGGACCTCACCACAATGGCTTGGTCCTCTGATTGAGGTGATTCGGTTCTCCACCAAGTCAATTGAGAGAGAGATCAACTCTGTCAACGACAACCCTTTGATTGATGTCTCAAGAAACAAGGCCTTGCATGGTGGGAACTTCCAGGGAACCCCTATTGGGGTATCCATGGACAACACACGTTTGGCTCTTGCATCAATTGGGAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGACTTGTACAACAATGGGTTGCCTTCAAATCTCTCTGCAAGTAGGAACCCCAGCTTGGATTATGGTTTCAAGGGTGCCGAGATTGCCATGGCTTCTTATTGTTCTGAACTCCAATACCTTGCAAATCCAGTCACAACCCATGTCCAGAGTGCTGAGCAGCACAACCAGGATGTGAACTCTTTGGGTTTGATTTCCTCTAGGAAAACCAACGAATCCATTGAGATCCTTAAGCTCATGTCTTCCACTTTCTTGGTTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAGAGCTCTGTCAAGAACACTGTGAGCCAAGTTGCCAAGAGGACCCTTACCATAGGGGTCAGTGGAGAACTCCACCCTTCAAGATTCTGTGAGAAGGATTTGCTGAAAGTGGTTGATAGGGAGCATGTGTTTGCCTATATTGATGACCCATGCAGTGCCACATACCCACTGATGCAAAAGCTTAGGCAAGTGCTTGTGGATCATGCATTGGTGAATGGAGAGAGTGAGAAGAACCTGAACACCTCAATCTTCCAAAAGATTGCAACTTTTGAGGATGAGTTGAAGACCCTCTTGCCAAAGGAGGTGGAAAGTGCAAGGGCTGCATATGAGAGTGGCAATTTGGCAATTCCAAACAAGATCAAGGAATGCAGATCTTACCCACTTTACAAGTTTGTGAGAGAGGAGTTGGGGACTGATTTGCTAACTGGAGAGAAGGTCATTTCACCAGGTGAGGAGTGTGACAAACTGTTCACAGCAGTGTGTCAGGGCAAAATCATTGATCCTCTTCTGGAATGCCTTGGGGAGTGGAANGGCACATACGTGGAGGGTTGCAGTGTGTCAGGAGAAATAAAGGAAGAGTTAACTGGTTCCGCTGGGTCAATCGTAATATCCAAGCATGTAGATGCTCGCATAAACAACAGCATGTATGGACAAATAAATGTGCAATCCAAAACACCTGTTGCAACAAATGGGGCACAGCAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00163	268768	283578	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10775	PAL	EC:4.3.1.24	Phenylalanine metabolism	map00360
			Phenylalanine metabolism	map00360
			Phenylalanine metabolism	map00360
			Phenylpropanoid biosynthesis	map00940
			Phenylpropanoid biosynthesis	map00940
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0006559 L-phenylalanine catabolic process

GO:0009058 biosynthetic process

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0003824 catalytic activity

GO:0016841 ammonia-lyase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000163s00011136.1	PF00221.14	Lyase_aromatic	62	558	1.60E-173
Glyur000163s00011136.2	PF00221.14	Lyase_aromatic	61	556	3.70E-174
Glyur000163s00011136.3	PF00221.14	Lyase_aromatic	62	144	7.00E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.694
SRR1783600	control	4.769
SRR1783602	moderate drought stress	6.102
SRR1811619	moderate drought stress	6.151

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.294
DRR006520	Root Summer glycyrrhizin high producing strain	6.083
DRR006521	Root Winter glycyrrhizin high producing strain	0.162
DRR006522	Root Winter glycyrrhizin high producing strain	0.149
DRR006523	Root Summer glycyrrhizin low producing strain	9.931
DRR006524	Root Summer glycyrrhizin low producing strain	9.696
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.091
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.743

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	91.421
SRR2868004	Drought Stress (root)	289.462
SRR2967015	Control (root)	165.936

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	99.691
SRR9715740	Leaf	30.977
SRR9715741	Leaf	189.477
SRR9715739	Root	8.168
SRR9715742	Root	40.037
SRR9715743	Root	32.230

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.108
SRR8749028	MeJA induced 9h	16.438
SRR8749029	MeJA induced 9h	2.832
SRR8749030	Uninduced	157.241
SRR8749031	Uninduced	59.612
SRR8749032	Uninduced	30.059

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.170
SRR8400027	Control - Root	56.393