Gene detail

Gene detail information of Glyur000163s00011123.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03330.2	1.00E-82	Cysteine proteinases superfamily protein
NR	XP_004493983.1	0	PREDICTED: uncharacterized protein LOC101498248 isoform X1 [Cicer arietinum]
trEMBL	tr\|V7CXC7\|V7CXC7_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW34759.1}

Sequence

Transcript Sequence

>Glyur000163s00011123.1
GATCGTCGTCATCTATTGCAATTGTACCTTCTCTGTTCCAACAGTGATTTCTCAGCAACAACCCCCCTTTTTCTTCTTCTTCCTCTTCCTCTTCTTCTTCCTCTTCTTCTTCGTGCTCCTCTTTCTTCTCTCTGCAGTTTCGCTTTCTGAATTCAGTTGGTGCTGAATCGAAGCTTTATTTATGCAGTTGTGTTCTTTCTGGTTTGGCATCGTTTCAACATTGTCCGAAAGGTTTCAGATTCCTTGTCAAGATTGACGTGTAAAGATGGCTTTATATGAGCATTCAGATGTTTACCAATGGGGTCTTAGTCTTCTCGACGGTGACCCTGGTTATAGTTCGGGGTACTATGAAAACATAATTCAACATGATACTGGTGACATCTATAATGGNCACTACTTCCATAGCCATTATGATAACGAATGTAACCATATAGAGAATGATGAGATCATTGCCCGTGCTCTTCAGGAAGAATTTTCACAGCTAGAGATTGCTGAATCTTCAAGGTATTTACAGGCAGGTGAAGATCATTTTCATGTTACTGAGACTGAGCCAGCATATGATTGGCATAATTCTTCAATGGCGAATTATTGTCCAGGAGGTCATGATTATGCCCAAGAAGGAGTTGGTGATGTAGAAAGTTCTTGTTCTAGTCCTTGTGAAACAGGGGAATATTCATTGGAGCTAACCGACAATTATCCACTTGATGATGAAGTAGGGAAGAGATTGAGTCAAATGATACCTATTCCTCATGTTCCAAAAATTAATGGAGAGATTCCTTCAATTGATGAGGCAACTTCAGATCATCAAAGGCTTCTGGATAGGTANCTATTGCAATTATATGACTTTGTGGAGCACAAGGTGCATGGTGATGGTAATTGCCAGTTCCGTGCACTGTCTGATCAATTGTTTCACGCACCTGATCATCACAAGTTTGTGAGGAGACAAGTTGTCAATCAGCTCAAATCTAATCCGGAGGTTTATGATGGATATGTTCCCATGGAATATGGTGACTATTTGGACAAGATGTCTAAGAGTGGAGAATGGGGNGATCATGTCACTCTTCAAGCAGCTGCAGATTCGTATGGTGTGAGAATATTTGTCATGACTTCTTTCAAGGACACCTGTTGCATAGAGATACTTCCAAATTTTGAGAAGCCAAAAGGAGTGATTTTTCTGAGTTTTTGGGCAGAGGTGCATTACAACTCCATCTACCCTCAAGGAGATATACTTTCAAATGAATCGAGAAAGAAGAAAAGATGGTGGAACTTTGGGAGCAAGCATTAGGGACTTGGCTGGCCTAGAGGGCACGCCCATTTTGAAACTGTACACTTTCCTTGTTCAGGGATTTAATTTATATAGCCCCATATCTTGGCTGGTCAATTTTTATAATAAATTTTATTTTCTTCTTTTATCAATTTAATTATAAATCTGGGAATGCTGATACGGCTGCATCCCAGTGGCATTTTGGATGCTTTGTGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00163	198452	203827	-

Gene family

Gene family	subfamily
Ubiquitin Family	OTU

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000163s00011123.1	PF02338.14	OTU	201	312	5.30E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.288
SRR1783600	control	12.286
SRR1783602	moderate drought stress	13.076
SRR1811619	moderate drought stress	12.923

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.138
DRR006520	Root Summer glycyrrhizin high producing strain	25.336
DRR006521	Root Winter glycyrrhizin high producing strain	29.166
DRR006522	Root Winter glycyrrhizin high producing strain	27.512
DRR006523	Root Summer glycyrrhizin low producing strain	44.033
DRR006524	Root Summer glycyrrhizin low producing strain	44.251
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.065
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.482

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.230
SRR2868004	Drought Stress (root)	8.811
SRR2967015	Control (root)	11.602

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.193
SRR9715740	Leaf	20.235
SRR9715741	Leaf	27.867
SRR9715739	Root	13.172
SRR9715742	Root	18.601
SRR9715743	Root	19.678

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.003
SRR8749028	MeJA induced 9h	30.982
SRR8749029	MeJA induced 9h	14.467
SRR8749030	Uninduced	36.868
SRR8749031	Uninduced	31.160
SRR8749032	Uninduced	22.053

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.245
SRR8400027	Control - Root	14.033