Gene detail

Gene detail information of Glyur000163s00011122

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G36990.1	5.00E-125	RNApolymerase sigma-subunit F
NR	XP_004493985.1	0	PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like isoform X1 [Cicer arietinum]
COG	YP_007066025.1	3.00E-79	RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC 7507]
Swissprot	tr\|Q9LD95\|SIGF_ARATH	0	RNA polymerase sigma factor sigF, chloroplastic (Precursor)
trEMBL	tr\|G7L3V2\|G7L3V2_MEDTR	0	RNA polymerase sigma factor {ECO:0000313\|EMBL:AES81891.1}

Sequence

Transcript Sequence

>Glyur000163s00011122.1
AGAATAGGGTAAAGGGAAAGGAAGTAGGAATAGAAAGCCTTTCGCTTCGCTTATGGTCTCTAATATAGTATTATCCATCTCCTTGGAAACTGGAAACTGTAGAGAAAGAGAATATAGTAGTAACTGATTCTTTGAGGGAGCGAGGGATAACACAACACTATGTTTTCTTCGTCTCCACCGTTTCCTTCTAGAACTCTTCCTTCGCCTTCAGTTATGATGCTTCATGAGCAAGGTGCTCCTGCAGTAGCTTCTTGGTCTTCTAGTTTTGCAGCTCAGCATTTTCCTACCTCAGTTCTTTTGCAAGAGCAGCGTGATGACTATAAGCCTCTACTTCACTTGTACAAGGAAGACAAGACATCCCAGGCAACATTAAATACAAGGCCGATGGATGTGGCCTCAGTTCATGATAAAAACAACGCCAGCAATGTTGATGAGTTGGTGCATNGCTTTATGCAGCAGTTGCATCTCCCTTGTCATTTACGGAACTTATTGGCTTCTTCACCAACAGGGGAAACTGCTGCTTCTTCAACTATGCAACCTATTGCGGTTGATTCAGAGATGCCTGCAGATGGTTTACAATGGAATGCAGTTTCTCTTGCAAAGCAAGCCTTGTCAGCCTCAAAACAAGCAGCTGCAGTAGCTGAAGAGTTGAAATTGATTAAAGCTGATGATGATGATCCACTTCCTCTCGGTCTGGCATCGACAAGTTTGGCTGACTCTTCCCTTGGAAAGAATAAAATCGTGAGGTCAACACGACGATCTAAACAGAGAAAAGTATCAAAGTCAAAAGTTGTCGATGAAGATAGTTACCTTACAAGAAAGTCCAATGTACAGGGAAGGTTACGTGTAGAAAAAAAGTTAAAAGAAGGGTTTGATGAAAATGATCCCCTGCGCTTGTTCTTGCGGGGTCCTGAATCAAAGCAACTTTTGACCCTTGTAGAAGAGACTCAATTGATTGCTCAGCTACAGGATTTATTTAGATTGGAAGAAGTGAAGAACAAGCTTCAGTCTCAGTTTGGACGGGATCCAACTTTGGCTGAATGGGCAGATGGTGTGGGCCTTAGCTGTCATGCCCTGCAGACACAGCTTCATTGCGGTAACAGAAGCAAAGAAAAGCTTATTCATGCCAACTTACGCCTGGTAGTTCACATTGCTAAACATTATCAGGGGCGTGGTGTCAGCTTTCAGGACTTATTGCAGGAAGGAAGTATGGGTCTTATGAAGAGTGTCGAAAAGTTCAAACCCCAAGCTGGTTGCCGGTTTGCTACATATGCTTACTGGTGGATAAGGCAATCAATAAGGAGGGCCATATTTCTGCATTCCAGAACAATCCGTCTGCCGGAGAATTTATACACCCTTTTGGGCAAGGTCATGGAAGCAAAGAAATTTTACATTAAAGAAGGCAATCTTCACCCCACCAAAGAAGAATTAGCAAGAAGAGTAGAAATTACAGTAGACAAATTGGAATTGTTGCTATCTGCTGTAAGAGTTCCGCTTTCGATGCAGAAAGCTGTGTGGGCAGACCAGGATACAACTTTCCAGGAGATTACTGCAGACTCTGCAATTGAGGCCCCAGATTTGTGTGTTGCAAAACAACAAATGAGGAGCCATGTGCGCAACCTCTTGAGTATCTTGAGCCCAAAAGAAAGGAGGATCATCAGGCTAAGATTTGGTATTGAGGATGGCTATGAGAAGTCTTTGTCAGAAATTGGCAACAGAATGGGTTTGTGTAAGGAGAGGGTCCGGCAGTTGGAGAGCCGAGGTTTGAACAAGCTCAAGCAGTGCCTTGTTAGTCAACAACTTGATGCATATGTAAACTTGCTTGTATAGATGATAAGGTTGTGCAATTTATCTTTACTTGGCTGTGACTTTTTTCTGGTCAAGTAGAAATGCAGCGACTATTGAGCTCGTGAAGGGGAAAAAAGGTCACTCAGGCAGCGTAGTTGAGAATGAACCAGGGTAACTGGAAGGAAGTAAATTCAAGAACCAAATCAAAAAAAGTTGGAATATATATGGTTAAGCATCTATTGACACTTGGGTGTAAATCTTGACATACTTATACTCTTAATTTTTTTTTCTGTAAAGTAAGAAATTAATCAATTTAATTGTTAAATTGTGTGATATCTTAACACACACACACACACACACACAGAGTTTGAGATCCACTGCACTTTAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00163	192043	196184	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006352 DNA-templated transcription, initiation

GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0016987 sigma factor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000163s00011122.1	PF04542.9	Sigma70_r2	320	384	2.90E-19
Glyur000163s00011122.1	PF04539.11	Sigma70_r3	401	473	1.60E-11
Glyur000163s00011122.1	PF04545.11	Sigma70_r4	489	541	1.30E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.896
SRR1783600	control	5.827
SRR1783602	moderate drought stress	6.867
SRR1811619	moderate drought stress	6.846

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.266
DRR006520	Root Summer glycyrrhizin high producing strain	8.277
DRR006521	Root Winter glycyrrhizin high producing strain	8.665
DRR006522	Root Winter glycyrrhizin high producing strain	8.534
DRR006523	Root Summer glycyrrhizin low producing strain	5.816
DRR006524	Root Summer glycyrrhizin low producing strain	5.926
DRR006525	Leaf Summer glycyrrhizin high producing strain	43.150
DRR006526	Leaf Summer glycyrrhizin high producing strain	43.460

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.130
SRR2868004	Drought Stress (root)	20.738
SRR2967015	Control (root)	21.021

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	58.550
SRR9715740	Leaf	90.073
SRR9715741	Leaf	53.804
SRR9715739	Root	1.558
SRR9715742	Root	6.341
SRR9715743	Root	5.487

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.346
SRR8749028	MeJA induced 9h	6.876
SRR8749029	MeJA induced 9h	5.279
SRR8749030	Uninduced	4.301
SRR8749031	Uninduced	6.355
SRR8749032	Uninduced	3.796

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.991
SRR8400027	Control - Root	15.729