Gene detail

Gene detail information of Glyur000163s00011115

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G46100.1	0	Histidyl-tRNA synthetase 1
NR	XP_003521406.1	0	PREDICTED: histidine--tRNA ligase, cytoplasmic-like isoform X1 [Glycine max]
COG	YP_003250680.1	1.00E-94	histidyl-tRNA synthetase [Fibrobacter succinogenes subsp. succinogenes S85]
Swissprot	tr\|P93422\|SYH_ORYSJ	2.00E-41	Histidine--tRNA ligase
trEMBL	tr\|I1JPP8\|I1JPP8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G34050.1}

Sequence

Transcript Sequence

>Glyur000163s00011115.1
NGCACAGCCATGCCTGCAACTCCATTTTCGAGTTCGTTCCTTGTCTTGCAACCACGCTTCAACTCCTACGTTAACCCTATCTTCCGTTCACTCAGCTACCAACTCTCGTCTTCGCCNGTCCCACTCCATGGCAAGTTCTCCAGTGTCAGACTCCATTCTGCACTTTCGCGAGCGGCGGAAACCGACTCTCCAAGCGGTNGTCGGTCAGGTGCATTATCTCCCGGTCCGGCTGTTACCGGCGACGTGAAGAAGATCGACGTGAACCCTCCNAAGGGGACACGTGACTTCGCTCCCGATGACATGCGCTTGCGCAACTGGCTCTTCAACAATTTCAAAGAGGTTTCGCGGTTGTATGGATTTGAGGAGGTTGATTTTCCGGTGCTTGAGTCGGAGGCATTGTTCACTAGGAAAGCAGGGGAGGAAATTAAAGACCAGCTTTATTGTTTTGAAGATCGGGGTAATCGGCGTGTTGCGTTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATACAGAAAGGGAAGTCCCTATCACTACCATTGAAGTGGTTCACTGTTGGACAATGTTGGCGGTATGAGAGAATGACAAGGGGCCGTCGTCGTGAGCACTACCAGTGGAACATGGATATCATTGGGGTTCCTGGGGTTATGGCTGAAGCAGAGCTTATATCTTCTATTATCACTTTGTTCAAGCGAATAGGAATTACAGAATCAGATGTTGGATTTAAGGTTTCTAGTCGAAAGGTTCTACAGGAAGTATTAAAGTGTTATTCAATTCCTGAAAATTTATTTGGCAAGGTCTGCGTCATTATTGATAAAATTGAGAAAATTCCAGTCGATGAGATAAAGAAAGAGTTGAAAGGTGCTGGTCTATCACAAGAGGCTGTCCAGGAGCTATTGCAAGTCCTTTCTGTAAAGTCATTGACCGAGTTAGAAGAGAGACTTGGAAACAGTGGGGAAGCGATTGCTGATCTAAAACAGCTATTCTCACTTGCTGAAAAGTTTGGTTACTCCAAATGGCTTCAATTTGATGCATCAGTTGTTCGTGGCCTTGCTTACTACACTGGCATTGTATTTGAGGGTTTTGACCGAGAAGGAAAGCTTCGAGCTATCTGTGGTGGTGGTCGATATGATCATTTATTCTCAACTTTTGGTGCTGATGACATTCCTGCTTGTGGTTTTGGATTTGGTGATGCAGTCATAGTGGAATTGCTCAGAGAGAAGGGTCTGCTACCAGAGCTCAGCTTGCAAATAGATAACATTGTTTGTGCCTTGGATGAAGAACTTCAAGGATATGCTGCTATGTCTTCTGATATGATATATAAATCTCCGTCTTCATTCTTTTATAGGATTTTTAAGCGAGCAGCTAGAACAAATGCTGAGCGGCTGGTATTGGTGGGGAATTCTGAGTGGCAAAGGGGTATGGTTGGCGTCAAAATTCTCTCTACTGGTGAACAGTACGAGGTTAAACTGGATGATCTAAAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00163	132740	141132	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01892	HARS, hisS	EC:6.1.1.21	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006418 tRNA aminoacylation for protein translation

GO:0006427 histidyl-tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0004812 aminoacyl-tRNA ligase activity

GO:0004821 histidine-tRNA ligase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000163s00011115.1	PF13393.1	tRNA-synt_His	89	394	1.70E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.552
SRR1783600	control	4.809
SRR1783602	moderate drought stress	4.188
SRR1811619	moderate drought stress	3.796

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.086
DRR006520	Root Summer glycyrrhizin high producing strain	5.675
DRR006521	Root Winter glycyrrhizin high producing strain	4.484
DRR006522	Root Winter glycyrrhizin high producing strain	4.220
DRR006523	Root Summer glycyrrhizin low producing strain	4.647
DRR006524	Root Summer glycyrrhizin low producing strain	4.644
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.022
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.485

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.286
SRR2868004	Drought Stress (root)	11.850
SRR2967015	Control (root)	13.413

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.469
SRR9715740	Leaf	26.698
SRR9715741	Leaf	18.682
SRR9715739	Root	6.861
SRR9715742	Root	8.195
SRR9715743	Root	6.581

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.036
SRR8749028	MeJA induced 9h	10.395
SRR8749029	MeJA induced 9h	9.729
SRR8749030	Uninduced	3.919
SRR8749031	Uninduced	5.505
SRR8749032	Uninduced	5.246

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.283
SRR8400027	Control - Root	19.964