Gene detail

Gene detail information of Glyur000163s00011105.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G36880.2	0	methionine adenosyltransferase 3
NR	XP_011077317.1	0	PREDICTED: S-adenosylmethionine synthase 3 [Sesamum indicum]
COG	YP_004983609.1	6.00E-157	S-adenosylmethionine synthase [Geobacillus thermoleovorans CCB_US3_UF5]
Swissprot	tr\|Q6SYB9\|METK2_TOBAC	0	S-adenosylmethionine synthase 2
trEMBL	tr\|A0A0A0KKA2\|A0A0A0KKA2_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN48191.1}

Sequence

Transcript Sequence

>Glyur000163s00011105.1
GTTCGGGTGATTTTCCAATTTCTAAAAAATGGGTTGGTCACAGGAGATAGTCGGTTGGTGACCGTTTTCCCATCTTGGGTCAAAACCCAATTGACCCATGCTAAATGGACCCAATAAAAACAACGAAAGAAAAGAGCGAGTCATTCGTCTATTTTCTGTTTCTCTGAATGCATAGAAGGGGGAAGGACACGTCTATATATAGATCGCACTAACTTTATTTTGCCTTCCTCTCTGGTTTCCTCACGTTTCCGGTTACCCACTCATTCTTCCTCCTCACTCAAAGCACCACATTTGATGGAGACCTTTCTCTTCACCTCAGAATCTGTAAATGAAGGCCACCCGGACAAGCTGTGTGACCAGGTTTCAGATGCCATCCTCGATGCATGCTTGGAGCAAGACCCAGAAAGTAAGGTTGCGTGTGAGACCTGTACAAAAACTAACATGGTTATGGTCTTTGGTGAGATCACAACCAAAGCCACTGTGAACTATGAGAAAATAGTTCGAGACACTTGCAGAGGCATTGGGTTCGTTTCACCTGACGTTGGTCTTGACGCTAACAACTGCAAAGTTCTTGTCAACATTGAGCAACAGAGTCCTGATATTGCTCAAGGAGTTCACGGCCACATGACCAAAAAACCCGAGGAAATTGGCGCTGGTGACCAAGGCCACATGTTTGGCTATGCAACAGACGAAACACCTGAGCTAATGCCACTTACCCATGTGATTGCCACTAAACTTGGTGCAAAGCTCACTGAAGTGAGAAAGAACAAAACATGCCCATGGTTAAGGCCTGATGGGAAAACCCAAGTGACTGTTGAGTACAAGAATGATGGTGGAGCCATGNTCCCCCTCCGCGTGCACACAGTCCTCATCTCAACCCAGCACGATGAAACAGTCACAAACGAAAAGATTGCTGAGGATTTGAAAGAGCATGTGATAAAACCTGTCATCCCAGCTAAATACCTTGATGACAAGACCATCTTCCACCTCAACCCTTCNGGTCGGTTTGTGATTGGTGGGCCCCATGGAGATGCAGGACTCACTGGTCGGAAGATCATTATCGACACCTATGGTGGTTGGGGTGCTCATGGTGGAGGTGCCTTCTCTGGAAAGGACCCAACCAAGGTCGATAGAAGTGGTGCATATATTGTTAGGCAAGCAGCGAAGAGCGTGGTAGCTTCAGGGCTAGCCAGACGCTGTATTGTGCAGGTTTCTTATGCAATTGGAGTCCCAGAGCCACTTTCTATATTTGTAGACACTTACAAAACGGGGAAGATTCCAGACAATGACATCTTGGCTCTGGTTAAGGAGAATTTTGACTTCAGGCCAGGAATGATTGCCATCAATCTCGACCTCACAAGAGGAGGCAACTTCAGGTACCAGAAGACTGCTGCTTACGGGCATTTTGGACGTGATGATCCTGATTTCACTTGGGAGACTGTGAAGATGCTCAAGCCCAAAGCTTGAGTTAGCAAAAAAGCCATGGTGTTGATTACAGGTGGTTATCATCGTAGCCATCTTTCAGATTTTGGGTAAAAAGAAAAATAAAGGAGCTTCAATGCGCACATCTCTTATTTTGAAGATACGTTTCACAGATTAATTGGATGAGGAAAGGGAGCAGAGATGACGTGGTGATGTCTCTTAGTTAGACGCTTCAGCACAATAGGAGCATGCAGCATTAGCTACCTCTTTCGTTTTTGGATTTACCACTTCATTTAAATTTACTTACTGTTGCGGGTTATTTTCTCCTCGCTCGTCTTCTATTGATTGTTTTGCAACCAACCAATCTTGTGTCATTGGTGTAAACTTAGAATGTTGTCGATTTGATTACCCCCTCCCCCTTTGGTGTCAATTTATGAAATTGTTTATTTTGCCTGATTTTAGACAGTTGTCCTCCGGCCGAAGTTTCCAATGGAGACATTAAATAATTAGGCTTTAACATGAAATATACTGAATTGTTGATGATTGGCAATTGGCAATGTAACATCTATAGAGAAATTACAAACATAAGAATGTTTATATCTTAACATGTCCTCAGGAGTGCAACCACAGGCGATCATGCAGCCTCTCCTCTCCGGTACCATACATCTCGTCTACCTTTTCACCATCTCGGAAAAATTGGAAGGTCGGGGTGTATCGAATGTGTTGAGTTGTTTCCGGGCATTCATCAATATCTGCGTAAATGAAGGAAAGCTTTGGGAATTGATTGCTCAGTCTACAGAATGCAGGTAGAATTTGGCTACAAACGCGACACCTGAAAAAACAGGAAACNGTATAATTTACACTGTCAACAATGGGTGTCTTTCAAAAAAAAAAAATTAAGGGCCTTGAATGTATTGTTATAATAATAATAATAATAATAACAGCATTTTCTCCTACGCTGTTATATCTAGTTTCTTATTTCTTAACCACTATTAATTCTATGN

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00163	76591	80105	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00789	metK	EC:2.5.1.6	Biosynthesis of amino acids	map01230
			Cysteine and methionine metabolism	map00270

Gene Ontology

biological_process
GO:0006556 S-adenosylmethionine biosynthetic process

molecular_function

GO:0004478 methionine adenosyltransferase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000163s00011105.1	PF00438.15	S-AdoMet_synt_N	3	101	2.70E-41
Glyur000163s00011105.1	PF02772.11	S-AdoMet_synt_M	116	238	1.50E-49
Glyur000163s00011105.1	PF02773.11	S-AdoMet_synt_C	240	382	1.60E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.805
SRR1783600	control	25.085
SRR1783602	moderate drought stress	10.399
SRR1811619	moderate drought stress	10.559

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	40.944
DRR006520	Root Summer glycyrrhizin high producing strain	40.043
DRR006521	Root Winter glycyrrhizin high producing strain	1.130
DRR006522	Root Winter glycyrrhizin high producing strain	0.785
DRR006523	Root Summer glycyrrhizin low producing strain	16.263
DRR006524	Root Summer glycyrrhizin low producing strain	16.689
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.202
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.022

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	106.692
SRR2868004	Drought Stress (root)	44.661
SRR2967015	Control (root)	54.223

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.727
SRR9715740	Leaf	3.067
SRR9715741	Leaf	3.407
SRR9715739	Root	38.002
SRR9715742	Root	14.667
SRR9715743	Root	19.680

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	55.024
SRR8749028	MeJA induced 9h	31.588
SRR8749029	MeJA induced 9h	37.394
SRR8749030	Uninduced	6.667
SRR8749031	Uninduced	7.376
SRR8749032	Uninduced	10.619

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.604
SRR8400027	Control - Root	47.518