Gene detail

Gene detail information of Glyur000163s00011104

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53220.1	1.00E-46	Thioredoxin superfamily protein
NR	AFK40302.1	2.09E-84	unknown [Lotus japonicus]
COG	YP_003572747.1	2.00E-10	Thioredoxin [Salinibacter ruber M8]
Swissprot	tr\|Q7XSQ7\|TRL33_ORYSJ	1.00E-68	Thioredoxin-like 3-3
trEMBL	tr\|I3SJ60\|I3SJ60_LOTJA	8.00E-85	Uncharacterized protein {ECO:0000313\|EMBL:AFK40302.1}

Sequence

Transcript Sequence

>Glyur000163s00011104.1
ATGGGCAATGGTGTGAGTAGCAACGAAGAAGATAAGTCAAAGAAAGGGTTAGAAGGCACTGGCATCGCTTTACCCATCAACCGTCACGCCAACTTGAAAAGCGCTTCCAGCGATGACGACTTCACCCACATCCTCGCCCACATCAAATCCTCCAGAACTCCCGCTGTTATCAATTATGGCGCTTCTTGGTGTCGCGTTTGTAGCCAAATTCTACCTGCATTCTGTAGACTGAGCAATCAATTCCCAAAGCTTTCCTTCATTTACGCAGATATTGATGAATGCCCGGAAACAACTCAACACATTCGATACACCCCGACCTTCCAATTTTTCCGAGATGGTGAAAAGGTAGACGAGATGTATGGTACCGGAGAGGAGAGGCTGCATGATCGCCTGTGGTTGCACTCCTGAGGACATGTTAAGATATAAACATTCTTATGTTTGTAATTTCTCTATAGATGTTACATTGCCAATTGCCAATCATCAACAATTCAGTATATTTCATGTTAAAGCCTAATTATTTAATGTCTCCATTGGAAACTTCGGCCGGAGGACAACTGTCTAAAATCAGGCAAAATAAACAATTTCATAAATTGACACCAAAGGGGGAGGGGGTAATCAAATCGACAACATTCTAAGTTTACACCAATGACACAAGATTGGTTGGTTGCAAAACAATCAATAGAAGACGAGCGAGGAGAAAATAACCCGCAACAGTAAGTAAATTTAAATGAAGTGGTAAATCCAAAAACGAAAGAGGTAGCTAATGCTGCATGCTCCTATTGTGCTGAAGCGTCTAACTAAGAGACATCACCACGTCATCTCTGCTCCCTTTCCTCATCCAATTAATCTGTGAAACGTATCTTCAAAATAAGAGATGTGCGCATTGAAGCTCCTTTATTTTTCTTTTTACCCAAAATCTGAAAGATGGCTACGATGATAACCACCTGTAATCAACACCATGGCTTTTTTGCTAACTCAAGCTTTGGGCTTGAGCATCTTCACAGTCTCCCAAGTGAAATCAGGATCATCACGTCCAAAATGCCCGTAAGCAGCAGTCTTCTGGTACCTGAAGTTGCCTCCTCTTGTGAGGTCGAGATTGATGGCAATCATTCCTGGCCTGAAGTCAAAATTCTCCTTAACCAGAGCCAAGATGTCATTGTCTGGAATCTTCCCCGTTTTGTAAGTGTCTACAAATATAGAAAGTGGCTCTGGGACTCCAATTGCATAAGAAACCTGCACAATACAGCGTCTGGCTAGCCCTGAAGCTACCACGCTCTTCGCTGCTTGCCTAACAATATATGCACCACTTCTATCGACCTTGGTTGGGTCCTTTCCAGAGAAGGCACCTCCACCATGAGCACCCCAACCACCATAGGTGTCGATAATGATCTTCCGACCAGTGAGTCCTGCATCTCCATGGGGCCCACCAATCACAAACCGACCNGAAGGGTTGAGGTGGAAGATGGTCTTGTCATCAAGGTATTTAGCTGGGATGACAGGTTTTATCACATGCTCTTTCAAATCCTCAGCAATCTTTTCGTTTGTGACTGTTTCATCGTGCTGGGTTGAGATGAGGACTGTGTGCACGCGGAGGGGGANCATGGCTCCACCATCATTCTTGTACTCAACAGTCACTTGGGTTTTCCCATCAGGCCTTAACCATGGGCATGTTTTGTTCTTTCTCACTTCAGTGAGCTTTGCACCAAGTTTAGTGGCAATCACATGGGTAAGTGGCATTAGCTCAGGTGTTTCGTCTGTTGCATAGCCAAACATGTGGCCTTGGTCACCAGCGCCAATTTCCTCGGGTTTTTTGGTCATGTGGCCGTGAACTCCTTGAGCAATATCAGGACTCTGTTGCTCAATGTTGACAAGAACTTTGCAGTTGTTAGCGTCAAGACCAACGTCAGGTGAAACGAACCCAATGCCTCTGCAAGTGTCTCGAACTATTTTCTCATAGTTCACAGTGGCTTTGGTTGTGATCTCACCAAAGACCATAACCATGTTAGTTTTTGTACAGGTCTCACACGCAACCTTACTTTCTGGGTCTTGCTCCAAGCATGCATCGAGGATGGCATCTGAAACCTGGTCACACAGCTTGTCCGGGTGGCCTTCATTTACAGATTCTGAGGTGAAGAGAAAGGTCTCCATCTCTGGTTGGTGGGAGAAGAAAAGATATGTTAAATTGTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00163	75953	78763	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006662 glycerol ether metabolic process

GO:0045454 cell redox homeostasis

molecular_function
GO:0015035 protein disulfide oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000163s00011104.1	PF00085.15	Thioredoxin	46	127	1.60E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.165
SRR1783600	control	28.587
SRR1783602	moderate drought stress	12.540
SRR1811619	moderate drought stress	13.470

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	46.051
DRR006520	Root Summer glycyrrhizin high producing strain	45.157
DRR006521	Root Winter glycyrrhizin high producing strain	3.422
DRR006522	Root Winter glycyrrhizin high producing strain	3.441
DRR006523	Root Summer glycyrrhizin low producing strain	21.238
DRR006524	Root Summer glycyrrhizin low producing strain	21.504
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.821
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.934

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	94.900
SRR2868004	Drought Stress (root)	48.986
SRR2967015	Control (root)	55.082

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.778
SRR9715740	Leaf	8.295
SRR9715741	Leaf	5.899
SRR9715739	Root	39.471
SRR9715742	Root	17.860
SRR9715743	Root	21.205

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	61.187
SRR8749028	MeJA induced 9h	33.865
SRR8749029	MeJA induced 9h	36.919
SRR8749030	Uninduced	8.032
SRR8749031	Uninduced	7.310
SRR8749032	Uninduced	12.219

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.277
SRR8400027	Control - Root	50.528