Gene detail

Gene detail information of Glyur000163s00011098

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G36870.1	8.00E-119	xyloglucan endotransglucosylase/hydrolase 32
NR	KHN09532.1	0	Putative xyloglucan endotransglucosylase/hydrolase protein 32 [Glycine soja]
COG	YP_003830841.1	9.00E-07	endo-1,3(4)-beta-glucanase [Butyrivibrio proteoclasticus B316]
Swissprot	tr\|Q9SJL9\|XTH32_ARATH	8.00E-163	Probable xyloglucan endotransglucosylase/hydrolase protein 32 (Precursor)
trEMBL	tr\|I1JPQ7\|I1JPQ7_SOYBN	0	Xyloglucan endotransglucosylase/hydrolase {ECO:0000256\|RuleBase:RU361120}

Sequence

Transcript Sequence

>Glyur000163s00011098.1
ATGGCTCTCTTTCTCTTTGCTATTTTAATCTTGTTGTTGTCCCCTTCTTCAAGCAATGCCTACTGGCCACCTTCACCTGGCTACTGGCCAAGTTCAAAATTCAGGTCTATGAGCTTTTACAAAGGATTTAGAAACCTCTGGGGCCCTCAGCACCAAAGACTGGACCAAATTCGTCCATTTCGATCCGGGTACTTTGGTGCTTCCATTAAGCTCCAACCTGGCTATACTGCAGGACTTTCAAACAATGAAGCACATCCTGGTTTACATGATGAAGTTGACATTGAGTTTCTTGGAACCACATTTGGAAAGCCTTATACTTTGCAGACCAATGTTTACATAAGAGGGAGTGGAGATGGGAAAATTATAGGTAGAGAGATGAAGTTCCATCTCTGGTTTGATCCCACCAAAGAATTTCATCACTATGCTATACTGTGGAGTCCTAAGGAGATCATATTCCTTGTGGATGATGTGCCTATAAGGAGGTACCCGAGGAAGAGTGCTGCAACATTTCCACTAAGGCCAATGTGGCTTTATGGTTCAATATGGGATGCATCATCATGGGCAACTGAAGATGGGAAGTACAAAGCTGATTACAGATACCAACCTTTTGTTGCAAGGTATACAAATTTCAAAGCCAGTGGTTGCTCAGCCTATGCACCTCGTTGGTGCCATCCAGTCTCAGCCTCACCATATCCCTCTGGTGGGTTGACCTCACAACAGTACAGTGCCATGAGATGGGTGCAGAGATACCACATGATTTATAACTATTGTCAAGACCCCAAAAGAGATCACAGGCTAACACCTGAGTGTTGGGGCTAAAAAGCNTCAAACTTTGCATATTGGGGGAATGAATGATGATTGATGCCTTTTGGGGTGGATTTTAAGAGTAGGGTACTAGAAAGTCTCTCACCACTTAGTGCCCAAAAATAGTATATATTAATAAACAATTTTAATATTTGAGATATTAAGTTATTCAAATCAATCTCAACTATTGAAATTATTTATTAATATATCTGGGGCTATTTTTAGGCCCTCATGGATGAGAGACTTTCTATGATNCTCACCTTAGAATTTACCGGGTAGTGGGTCCCAAAAAAAGAGAAAAACACTGTTCTCCTGTGATCTATTTTGTTTCTGTCTTTCAGAAAGTTTCTTTCTTTTTTACTTTGTGGGGGTGACTTGAGATGGGGCCCTTCACTTGACAGCAAACATTATGCAAGTGTACGGGCTTGAGCGTCCAAGGCTCTCAAGACACGAGAAAATTTGGAAGATTGTGTGGGTTTTTTTAGTGTGTTTGTCATATCTCTTTTGTTTGGTGTAAACCAAGGAGGAAAAGAATAGAAAAGGAAAGAAAACAATGGAAGAGTGTGTGAGAGAGAAGGGAATAATATCAATGTCCAAGAAAAGCAAAGTGGCCAATTATGTATGGGTCGGTAAATGTGGCACTGTTTGAGTGCGAATATTATAAGCATACATACTCCTCATTTTATAACGTTATCTTTGTCAATTTCAATGATGAAAACGAGAAACTCTGTGTGAATCTTGCAGAAGAGGGTAAATGTGTTCTGCTCCAAGACTTGCGTGCCATGAAACTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00163	47807	50278	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH16

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006073 cellular glucan metabolic process

cellular_component

GO:0005618 cell wall

GO:0048046 apoplast

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016762 xyloglucan:xyloglucosyl transferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000163s00011098.1	PF00722.16	Glyco_hydro_16	60	199	7.00E-38
Glyur000163s00011098.1	PF06955.7	XET_C	227	270	8.10E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.302
SRR1783600	control	7.376
SRR1783602	moderate drought stress	5.844
SRR1811619	moderate drought stress	5.773

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.350
DRR006520	Root Summer glycyrrhizin high producing strain	14.562
DRR006521	Root Winter glycyrrhizin high producing strain	0.069
DRR006522	Root Winter glycyrrhizin high producing strain	0.068
DRR006523	Root Summer glycyrrhizin low producing strain	1.300
DRR006524	Root Summer glycyrrhizin low producing strain	1.208
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.807
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.913

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.545
SRR2868004	Drought Stress (root)	2.192
SRR2967015	Control (root)	2.405

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.904
SRR9715740	Leaf	0.342
SRR9715741	Leaf	0.156
SRR9715739	Root	5.362
SRR9715742	Root	2.222
SRR9715743	Root	3.576

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.484
SRR8400027	Control - Root	17.037