Gene detail information of Glyur000162s00009936 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G24790.1 | 1.00E-62 | CONSTANS-like 3 |
| NR | AGZ15419.1 | 1.78E-139 | constans [Phaseolus vulgaris] |
| Swissprot | tr|Q940T9|COL4_ARATH | 9.00E-92 | Zinc finger protein CONSTANS-LIKE 4 |
| trEMBL | tr|U5TZJ5|U5TZJ5_PHAVU | 7.00E-140 | Constans {ECO:0000313|EMBL:AGZ15419.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00162 | 270898 | 272614 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | DBB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000162s00009936.1 | PF00643.19 | zf-B_box | 4 | 47 | 3.90E-07 |
| Glyur000162s00009936.1 | PF00643.19 | zf-B_box | 47 | 91 | 7.30E-05 |
| Glyur000162s00009936.1 | PF06203.9 | CCT | 244 | 287 | 7.50E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.176 |
| SRR1783600 | control | 2.197 |
| SRR1783602 | moderate drought stress | 3.690 |
| SRR1811619 | moderate drought stress | 3.611 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.590 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.712 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.106 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.508 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.732 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.536 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 57.245 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 57.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.208 |
| SRR2868004 | Drought Stress (root) | 34.573 |
| SRR2967015 | Control (root) | 47.812 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 67.197 |
| SRR9715740 | Leaf | 38.129 |
| SRR9715741 | Leaf | 73.483 |
| SRR9715739 | Root | 5.813 |
| SRR9715742 | Root | 8.190 |
| SRR9715743 | Root | 6.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 81.862 |
| SRR8749028 | MeJA induced 9h | 99.069 |
| SRR8749029 | MeJA induced 9h | 63.409 |
| SRR8749030 | Uninduced | 17.979 |
| SRR8749031 | Uninduced | 15.073 |
| SRR8749032 | Uninduced | 38.923 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.847 |
| SRR8400027 | Control - Root | 19.944 |