Gene detail information of Glyur000162s00009933 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G24970.2 | 0 | Protein kinase superfamily protein |
| NR | XP_004501397.1 | 0 | PREDICTED: uncharacterized protein sll0005-like isoform X2 [Cicer arietinum] |
| COG | YP_007141982.1 | 1.00E-127 | ABC-1 domain-containing protein [Crinalium epipsammum PCC 9333] |
| Swissprot | tr|Q9MA15|Y1796_ARATH | 8.00E-114 | Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic (Precursor) |
| trEMBL | tr|I1JU46|I1JU46_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G06260.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00162 | 250299 | 258456 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000162s00009933.1 | PF03109.11 | ABC1 | 291 | 403 | 2.50E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.545 |
| SRR1783600 | control | 4.479 |
| SRR1783602 | moderate drought stress | 4.250 |
| SRR1811619 | moderate drought stress | 4.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.837 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.478 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.040 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.874 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.099 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.996 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.978 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.872 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.180 |
| SRR2868004 | Drought Stress (root) | 9.547 |
| SRR2967015 | Control (root) | 7.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.393 |
| SRR9715740 | Leaf | 6.363 |
| SRR9715741 | Leaf | 4.271 |
| SRR9715739 | Root | 1.945 |
| SRR9715742 | Root | 2.855 |
| SRR9715743 | Root | 3.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.209 |
| SRR8749028 | MeJA induced 9h | 8.041 |
| SRR8749029 | MeJA induced 9h | 3.914 |
| SRR8749030 | Uninduced | 4.924 |
| SRR8749031 | Uninduced | 1.413 |
| SRR8749032 | Uninduced | 1.753 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.386 |
| SRR8400027 | Control - Root | 9.944 |