Gene detail

Gene detail information of Glyur000162s00009926

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G24820.1	0	translocon at the inner envelope membrane of chloroplasts 55-II
NR	XP_004501394.1	0	PREDICTED: protein TIC 55, chloroplastic-like [Cicer arietinum]
COG	YP_001865463.1	3.00E-82	Rieske (2Fe-2S) domain-containing protein [Nostoc punctiforme PCC 73102]
Swissprot	tr\|O49931\|TIC55_PEA	0	Protein TIC 55, chloroplastic (Precursor)
trEMBL	tr\|I1JU51\|I1JU51_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G06320.1}

Sequence

Transcript Sequence

>Glyur000162s00009926.1
CCCTNTGTTCCAATTGCATTAATTGGGTTCCCTAGATATAGTGCNATTGAAACCCGATGAACTAAATTGCACATTACTAGCAGAGAGACTAAAAGTGCAAAGTCTNACGGAAAATTTGAACTCTATTATTGCAAATCGCTATTCGCTAAGTATGAGATGTACTACTGGTGGATAATTCATCAAGATTTTGTTTTAAATTTAAGGTAATTCATCAATATAAATATGTGGCTAAGAATGGCACACGAACCCTGCAACCGCAACTGCCACACACACCTGAAGTCGACAACAATAACAAGTGTCTTCTCCTGCATTCTACTTCTTTGCCAACCAAACCCCACACTACTGGCCAAGCCATGGCGTTGGTGAATCCATTTTTCCTCCCCAGCAAAACTGGTATGCCTCTGCATGTTTCAACTCCACCATCCAAGCAAGTACTCCTTTGGAATCTCTCTTCTTCCAACCCCTCCTTCAATTTCAGACNAGCCCTGTCATCATCAAGAAGGTGTGGTGCCACAGCAGATATAAAGGCTGCACCTTTCCTTGATGGGGAAGAAGAAGATCACAGGGTTCTGGTGGGTCCTTCCAGCGAGGAAGAGCGCAGGGGTGATAGGGTCGTTGCGGGCTATGACTGGACAGAGGAATGGTACCCTTTGTACCTCACGCAGAATGTTCCCGACGATGCACCCCTCGGCCTCAAAGTGTTTGACAAGGACCTCGTGCTGTTTAAGGATGGCAATGGCCAGTTTCACTGTTATGAAGATCGATGCCCCCACAGGTTAGCAAAACTATCTGAAGGCCAGTTGATTGATGGAAGGCTTGAATGCCTATACCATGGATGGCAATTCGAAGGCGAGGGCAAATGTGTGAAGATACCTCAGCTTCCAGCTGATGCCAAAATTCCTAGGTCAGCCTGTGTTAAAACATATGAGGTGAGGGACTCTCAAGGTGTTATTTGGGTATGGATGTCTCCAAAGACACCTCCAAATGTCAGTAAAATACCTTGGTTTGAGAACTTTGCAAGGCCAGGGTTTCAAGATGTTTCAACAACTCATGAACTCCCATATGATCATTCCATTCTTCTGGAAAACCTGATGGATCCTGCTCATATCCCAATCTCACACGACAGAACAGATTGGACTGCAAAAAGAGAAGACGCACAGCCACTGTGTTTTGAAGTAACTGAACGAACTGATAGAGGGTTTGCAGGTTGGTGGGGCAGAGAGAAAGATGGGTCTATGCCTAACTTCTTACGGTTTGAGGCTCCTTGTGTTCTACAAAATAACAGGGAGATTGTTGATAAAAANGGTGAAATAAACTACTTCACTGGTCTTTTCCTTTGTAGACCAACTGGGCAAGGGAAATCCATGCTGATAGTGAGGTTTGGAGGAACAAAAAGATCCCCACTAGCAAAACTGTTTCCTCAATGGTACTTCCATCAGAACGCAAGCAAGGTGTTTGAGCAAGACATGGGNTTCTTATCATCCCAGAATGAAATTCTTTTGAAAGAGAAGGTTCCAACAAAGGAACTATACCTGAATCTCAAATCATCAGACACATGGGTTGCTGAATACCGGAAGTGGATGGATAAAGTGGGACACGGCATGCCATATTATTTTGGTCACAGCACTATTTCCTTGCCCGAAGAGCCTGCTGTGGTTGAACATGCTCCTGCTGGACTCATTGCAGGACAATCAGCTTCCTCACCTGCAAAAGGGGGCATTGGAACAATGCATGCCCCAAATTTAGCCAATAGATATTTTAGACATGTAATACATTGCAAAGGATGTAGAACCGTCGTCAAAGCTTTTCAAGCTTGGAAAAATGCCCTTTCAGCTGTGGCCGTTACCTTAGCCGCATTGGCAATTCTGGTATCTGGGAGACAATGGAAAGCCCTTCTGTTGGCGTCTGCANCCCTGTGCTCTGTTGGAGTATATGCTTGCTCAACCGCTATTGCAATGAATACAACAAACTTTATTAGGACACACAGGAGATTGTGAGCAACAAGTTGTTAATAATAGTTACTTCCAAGCCAATACTTACNGTTTGTGTAATGAGTCAATGACTAATGAGTTGTTGATATGGTTGGATTTCATCTGGTCTCGTCTCTTCTCCTTCTATGTTATTTAAGCCAACCAAGGAAAAGAAGAAGAAAAAAACTTACNTCTAATACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00162	218820	221635	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0010277 chlorophyllide a oxygenase [overall] activity

GO:0016491 oxidoreductase activity

GO:0051537 2 iron, 2 sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000162s00009926.1	PF00355.21	Rieske	96	187	5.20E-18
Glyur000162s00009926.1	PF08417.7	PaO	301	386	2.90E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.064
SRR1783600	control	0.951
SRR1783602	moderate drought stress	2.557
SRR1811619	moderate drought stress	2.668

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.907
DRR006520	Root Summer glycyrrhizin high producing strain	2.890
DRR006521	Root Winter glycyrrhizin high producing strain	4.541
DRR006522	Root Winter glycyrrhizin high producing strain	4.735
DRR006523	Root Summer glycyrrhizin low producing strain	5.021
DRR006524	Root Summer glycyrrhizin low producing strain	5.444
DRR006525	Leaf Summer glycyrrhizin high producing strain	45.716
DRR006526	Leaf Summer glycyrrhizin high producing strain	45.185

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.060
SRR2868004	Drought Stress (root)	15.218
SRR2967015	Control (root)	10.576

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	53.995
SRR9715740	Leaf	65.713
SRR9715741	Leaf	61.638
SRR9715739	Root	3.581
SRR9715742	Root	5.598
SRR9715743	Root	5.135

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.948
SRR8749028	MeJA induced 9h	5.119
SRR8749029	MeJA induced 9h	3.419
SRR8749030	Uninduced	2.839
SRR8749031	Uninduced	3.533
SRR8749032	Uninduced	9.072

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.991
SRR8400027	Control - Root	8.746