Gene detail

Gene detail information of Glyur000162s00009922

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G31860.1	2.00E-174	Protein phosphatase 2C family protein
NR	KHN29636.1	0	Hypothetical protein glysoja_016258 [Glycine soja]
COG	YP_003709340.1	3.00E-24	serine/threonine PP2C protein phosphatase [Waddlia chondrophila WSU 86-1044]
Swissprot	tr\|Q9SZ53\|P2C60_ARATH	0	Probable protein phosphatase 2C 60
trEMBL	tr\|G7J9T2\|G7J9T2_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK48884.1}

Sequence

Transcript Sequence

>Glyur000162s00009922.1
CAAAAGAAGGAGATAAGAACAAAACACAAGAGAGAGAGAGAGTGACACAACGTTGTTGTACTTGGAGTCTATGAACAGTCACCGGGAGTGAAAATCGAGATTTTTCGCAGGCCAAAAGCCTTAAACCAAAAATCTGGTNCCTTCTTTATGCTGTGCTCCTTGATTCTCTTCTCTGATCAATTTTCATTTTTGCTTATTTGAATTGCTGTCAATTGGGGTGGCTTCTGTGAACTCCTGCTAGTGAGATAGGAATGGGGATATATCTCAGCACTCCGAAAACTGAAAAGTTTTCTGAAGATGGTGAAAATGATCGTCTTAGATATGGTTTATCGTCCATGCAAGGGTGGCGTGCAACAATGGAAGATGCTCATGCTGCATATACTGATCTGGATGAGTCTACATCATTTTTTGGTGTTTATGATGGTCATGGAGGTAAGGTGGTTGCAAAGTTCTGTGCTAGGTTTCTTCACCAACAGGTGCTCAAAAGTGAAACATACTTAGCTGGAGATATAGGAACCTCTCTTCAGAAAGCATTTTTAAGAATGGATGAGATGATGCGTGGTCAAAGGGGATGGAGGGAGTTATCAGTCTTGGGGGATAAGATAAACAAGTTTACTGGGATGATAGAAGGGTTGATTTGGTCTCCACGAAGCAGTGATGGTAATGACCGAGTTGATGATTGGGCTTTTGAGGAGGGGCCTCATTCTGATTTTGCTGGACCAACTTCAGGAAGCACTGCCTGTGTTGCAGTCATTAGAAACAACCAACTTGTTGTTGCAAATGCTGGTGATTCACGTTGTGTAATATCTAGGAAGGGTCAGGCATACAATTTGTCTAGAGACCACAAACCTGATCTTGAGATTGAGAAGGAAAGAATCTTAAAAGCTGGTGGTTTTATTCATGCAGGACGAGTAAATGGCAGTTTAAATCTTGCTAGAGCTATTGGCGACATGGAATTTAAACAGAATAAATTTCTTCCTTCTGAAAAGCAAATTGTAACTGCTAATCCAGATATAAACACTGTTGAGCTTTGTGATGAAGATGAATTCATGGTGCTAGCTTGTGATGGCATATGGGATTGCATGTCAAGCCAACAATTGGTAGATTTTGTTCAAGAACAATTGCGCTCGGAAACGAAACTTTCTGCAGTGTGTGAAAGAGTACTTGACCGGTGTTTGGCACCATCAACCGCCGGTGGTGAGGGATGTGATAACATGACCATGATCTTGGTTCAGTTCAAAAAACCTGCTCAGTCCAGTGCACCAGCACCAGCAGAAGAGCAATCCTCATCAAACGGNCAAGCTGAAACTGAACCGAAGCTGGAAAGACGTGAAATTTAGTATGTATACGCTGCAACAGTTCAAATATATATTTTATATATATAGACACACGTATATGTATATAATGTGCACCAATGCTTAGATTGTGTCTGAATGGCCATTCTCCTTTTGGTCTAACATTATATACAACAGTTATTCTGATCAGTCACCATATAAATATCAGAGTTTTTCTCACTCTTCTTGCTCTCTCCCGTGTCTACTATTTTCACTCCTAAAGTGGGAAATTGCCGGCAAAAATCAAAATAAAATAATTATTTCATTTAAACCGAATAGAATTTAACTGAAAGCTGGCTGAAAAGTGTCTTTACCAATTGTGTACGGTGCATTGCCTCTTACCAATTGTGAATATATGATATATGATAATCTGGCATAAAATTAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00162	198717	205493	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006470 protein dephosphorylation

molecular_function

GO:0003824 catalytic activity

GO:0004722 protein serine/threonine phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000162s00009922.1	PF00481.16	PP2C	23	103	1.40E-11
Glyur000162s00009922.1	PF00481.16	PP2C	155	313	1.40E-59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.029
SRR1783600	control	11.130
SRR1783602	moderate drought stress	17.318
SRR1811619	moderate drought stress	17.510

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.826
DRR006520	Root Summer glycyrrhizin high producing strain	30.816
DRR006521	Root Winter glycyrrhizin high producing strain	77.192
DRR006522	Root Winter glycyrrhizin high producing strain	75.804
DRR006523	Root Summer glycyrrhizin low producing strain	33.632
DRR006524	Root Summer glycyrrhizin low producing strain	32.491
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.132
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.867

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.296
SRR2868004	Drought Stress (root)	25.953
SRR2967015	Control (root)	36.781

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.698
SRR9715740	Leaf	36.952
SRR9715741	Leaf	36.776
SRR9715739	Root	3.330
SRR9715742	Root	15.831
SRR9715743	Root	14.481

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.085
SRR8749028	MeJA induced 9h	11.344
SRR8749029	MeJA induced 9h	5.227
SRR8749030	Uninduced	8.572
SRR8749031	Uninduced	5.202
SRR8749032	Uninduced	4.890

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.970
SRR8400027	Control - Root	31.409