Gene detail

Gene detail information of Glyur000162s00009921

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G31850.1	proton gradient regulation 3
NR	XP_004501390.1	PREDICTED: pentatricopeptide repeat-containing protein At4g31850, chloroplastic-like [Cicer arietinum]
Swissprot	tr\|Q9SZ52\|PP344_ARATH	Pentatricopeptide repeat-containing protein At4g31850, chloroplastic (Precursor)
trEMBL	tr\|G7J9T7\|G7J9T7_MEDTR	Proton gradient regulation protein {ECO:0000313\|EMBL:AES73537.1}

Sequence

Transcript Sequence

>Glyur000162s00009921.1
ATGGCCGTCTTGGTTCTCTGCTCCTCAACCATATGTTGTAGCAGTGTGTCATCTTGTTGTGCTTTGACTGGCATTAATTTCTACGTTCTGAGCAAAAATGGATTCCTAGGAGAAACCAACTTTGTCAAAATGAAAACTTTGTCAAAGGGGTCTCTGGGAAATTGGAAGAAACGTGGAAAATCACACCTGGGTCATCCTGTATCTGGGACCAAATGTTGTGCCCGTGAGGTGGTTGTGGTAAATGGCAAGAGCAAAGCTAAAGTGTCCTCTGAAGAAGTTATTGGCATTCTGAAGTCTATCTCGGATCCAAGTTCAGCTCTTTCATATTTTAAGTTGGTTTCCCAGTTGCCCAATTTTGTGCATACCACTGATGCATGTGATTACATGCTTGAGTTATTGAGTGNTCATGGGAGGATTGAGGATATGGTTTTTGTCTTTGATTTGATGCAAAAGAAAGTTATCTACAGGAGTTTGAATACGTACCTGACTATTTTTAAGGCTCTCTCAATCAAAGGTGGGATTCGACAAGCATCGACTGCGCTTGGAAAGATGAGGCAAGCTGGGTTCATCTTGAATGCATATTCATATAATGGACTGATCCATTTACTGCTACCTGGCTTTTGTAAAGAGGCTTTGAAGGTTTACAAAAGAATGGTCTCAGAAGGGATGAGGCCTAGCATGAAGACATACTCGGCGTTGATGGTGGCATTGGGGAGGAGAAGGGACACTGGAGTCATTATGGATTTATTGGAAGAAATGAAAACTCTGGGTTTGAGGCCAAATATATACACATATACCATATGTATTAGAGTGCTTGGGAGGGCAGGGAGGATTGATGATGCGTGGAGGATTTTCGAGCAAATGGANGATGAAGGATGCGGGCCTGATGTTGTCACTTATACAGTCCTGATTGATGCTCTTTGTGCCGCAGGGAAACTTGATAAGGCCATGGAATTATATATAAAGATGAGAGCCAGCAGTCACAGACCGGATCAGGTAACATACACTACTTTAATGGACAAGTTTAGTAGCTGTGGCGACTTGGAAACAGTAAAAAGATTCTGGAGTGAGATGGAGGCTGATGGTTATGCTCCTGATGTGGTTACCTACACTATACTTATTGAGGCTTTGTGCAAGTCCGGGAATGTTGATCGGGCATTTGCCATGTTAGATGTGATGACAGCAGAAGGAATTTTTCCAAATCTTCATACTTACAACACATTGATTTCTGGACTTTTGAAGCTGAGAAGATTAGATGAGGCATTAGAACTTCTTGAAAACATGGAATCTTTGGGTGTTGAACCTACCGCTTATTCGTATGTTCTTTTCATTGATTATTATGGAAAGTCTGGTGATCCTGGAAGAGCTCTTGACACCTTTGAAAAAATGAAAAAGAGAGGCATTGCGCCCAGCATAGCAGCGTGTAATGCATCTTTATATACTCTAGCAGAAACGGGTAGGATCAGAGAAGCAAAAGATATATTCAATGATCTTCACAATTGTGGGCTTTCACCAGATTCAGTAACCTATAATATGATGATGAAGTGCTATAGCAAAGCAGGGCAAATAGACAAAGCCATAAAACTTTTGTCTGAGATGATAAGCAAAGGGTGTGAACCAGATGTAATGATAGTTAATTCTTTAATTGACACACTTTACAAGGCTGGCCGGGTTGATGAGGCATGGAAGATGTTTGGGAGACTGAAGGATTTGAAGCTAGCTCCTACAGTTGTGACATACAACATTTTACTTACCGGTTTGGGGAAAGAGGGAAAAATCCTGAAGGCCCTTGAATTATTTGGGAGTATGACAGAGTCTGGGTGCCATCCAAACACGATAACGTTTAACACACTCCTNGATTGTCTTTCCAAGAATGATGCAGTTGATTTGGCCTTGAAGATGTTCTGTAGAATGACAATGATGAACTGTAGTCCCGATGTTCTGACATATAACACTGTCATCTATGGCTTGACCAGAGAAGGCAGAACTGATTATGCATTCTGGTTTTTCCATCAGATGAAGAAATTTCTCTCCCCTGATCATGTAACTTTGTGCACCCTCCTTCCGGGTGTTGTAAGGCATGGAAGGGTTGAGGATGCAATCAAGATTGTAGTGGAATTTGTGCATCAGACAGGTTTACAGACAGACAAACAATTCTGGGGAGAACTAATGGAATGTATTTTAATTGAAGCAAAAACAGAAGAGGCCATTTCATTTGCTGAAAGATTGGTATGCAATTCAATTTGCCAAGACGACCATGTAATGTTACCTCTAATTAGAGTNCTGTGTAAGCGGAACAAGGCCCTTGATGCTCAAAACTTATTTGACAAATTCACCAAAACTTTGGGAATTCACCCAACCCTGGAATCATATAATTGCTTGATGGATGGGCTTCTTGGATGTAATGTCACCGAAAAAGCTTTAAAACTTTTTGAGGAGATGAAGAATGCAGGTTGTTCCCCAAATATTTTCACCTACAACTTGTTGCTCGATGCTCATGGTAAATCTAGGAGGGTTAATGAACTTTTTGAGCTGTACAATGAGATGCTTTGTAGGGGATGCAAGCCTAATGCTATAACCCATAATATTGTCATCTCCTCCCTCGTGAAATCTAATAGCGTGAATAAGGCGTTAGATTTATATTACGAACTTGTAAGTGGCGATTTCTCTCCCACTCCTTGTACATATGGCCCTCTTATAGATGGTCTTTTAAAGGCTGGAAGATTGGAGGAAGCAATGAAGATCTTTGAGGAGATGTTAGACTATCAATGCAAGCCCAACTGTGTCATTTACAATATTCTCATCAATGGATTNGGGAAAGCAGGTAAAATTGATGTTGCTTGTGATTTGTTCAAAAGGATGGTTAAAGAAGGAATAAGGCCAGACTTGAAATCCTATACCATTCTTGTAGAATGCCTGTGTAAGACTGGTAGAGTTGATGAAGCTCTGAACTACTTTGAGGAACTGAAGTTAACTGGCCTCGATCCTGATACAGTTTCATACAATTTCATGATCAATGGGCTTGGAAAATCGCGTAGGTTCGAGGAAGCGCTTTCTCTTTTTAGTGAAATGAAGAATAGGGGAATTTCTCCTGATCTTTACACTTACAATGCATTTATTTTCCATTTTGGAATTGCTGGAAAGGTAGACCTAGCTGGAAAAATGTACGACGAACTGCAACTTAAGGGTTTCGAACCTAATGTCTTCACTTATAATGCTCTCATTCGCGGTCATAGCTTGTCAGGAAATAAAGACCAAGCCTTTTCTGTCTTCAAGAAGATGATGGTTGTGGGGTTACACCCCAACGCGGAGACTTTTGCTCAACTGCCTAATAAATGTTGA

Protein Sequence

>Glyur000162s00009921.1
MAVLVLCSSTICCSSVSSCCALTGINFYVLSKNGFLGETNFVKMKTLSKGSLGNWKKRGKSHLGHPVSGTKCCAREVVVVNGKSKAKVSSEEVIGILKSISDPSSALSYFKLVSQLPNFVHTTDACDYMLELLSXHGRIEDMVFVFDLMQKKVIYRSLNTYLTIFKALSIKGGIRQASTALGKMRQAGFILNAYSYNGLIHLLLPGFCKEALKVYKRMVSEGMRPSMKTYSALMVALGRRRDTGVIMDLLEEMKTLGLRPNIYTYTICIRVLGRAGRIDDAWRIFEQMXDEGCGPDVVTYTVLIDALCAAGKLDKAMELYIKMRASSHRPDQVTYTTLMDKFSSCGDLETVKRFWSEMEADGYAPDVVTYTILIEALCKSGNVDRAFAMLDVMTAEGIFPNLHTYNTLISGLLKLRRLDEALELLENMESLGVEPTAYSYVLFIDYYGKSGDPGRALDTFEKMKKRGIAPSIAACNASLYTLAETGRIREAKDIFNDLHNCGLSPDSVTYNMMMKCYSKAGQIDKAIKLLSEMISKGCEPDVMIVNSLIDTLYKAGRVDEAWKMFGRLKDLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCHPNTITFNTLLDCLSKNDAVDLALKMFCRMTMMNCSPDVLTYNTVIYGLTREGRTDYAFWFFHQMKKFLSPDHVTLCTLLPGVVRHGRVEDAIKIVVEFVHQTGLQTDKQFWGELMECILIEAKTEEAISFAERLVCNSICQDDHVMLPLIRVLCKRNKALDAQNLFDKFTKTLGIHPTLESYNCLMDGLLGCNVTEKALKLFEEMKNAGCSPNIFTYNLLLDAHGKSRRVNELFELYNEMLCRGCKPNAITHNIVISSLVKSNSVNKALDLYYELVSGDFSPTPCTYGPLIDGLLKAGRLEEAMKIFEEMLDYQCKPNCVIYNILINGXGKAGKIDVACDLFKRMVKEGIRPDLKSYTILVECLCKTGRVDEALNYFEELKLTGLDPDTVSYNFMINGLGKSRRFEEALSLFSEMKNRGISPDLYTYNAFIFHFGIAGKVDLAGKMYDELQLKGFEPNVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGLHPNAETFAQLPNKC

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00162	194478	197819	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000162s00009921.1	PF12854.2	PPR_1	257	288	1.50E-08
Glyur000162s00009921.1	PF13041.1	PPR_2	295	343	2.30E-15
Glyur000162s00009921.1	PF13041.1	PPR_2	365	413	3.00E-16
Glyur000162s00009921.1	PF13812.1	PPR_3	438	470	2.80E-05
Glyur000162s00009921.1	PF13041.1	PPR_2	505	542	1.30E-12
Glyur000162s00009921.1	PF01535.15	PPR	546	570	0.0021
Glyur000162s00009921.1	PF13041.1	PPR_2	575	624	5.20E-16
Glyur000162s00009921.1	PF12854.2	PPR_1	642	674	1.20E-09
Glyur000162s00009921.1	PF01535.15	PPR	790	819	4.20E-05
Glyur000162s00009921.1	PF13041.1	PPR_2	821	870	9.20E-15
Glyur000162s00009921.1	PF12854.2	PPR_1	889	919	1.30E-07
Glyur000162s00009921.1	PF13041.1	PPR_2	926	975	6.70E-15
Glyur000162s00009921.1	PF13041.1	PPR_2	996	1040	1.10E-16
Glyur000162s00009921.1	PF13041.1	PPR_2	1066	1107	1.70E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.180
SRR1783600	control	1.196
SRR1783602	moderate drought stress	2.488
SRR1811619	moderate drought stress	2.415

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.730
DRR006520	Root Summer glycyrrhizin high producing strain	2.616
DRR006521	Root Winter glycyrrhizin high producing strain	5.700
DRR006522	Root Winter glycyrrhizin high producing strain	5.524
DRR006523	Root Summer glycyrrhizin low producing strain	4.590
DRR006524	Root Summer glycyrrhizin low producing strain	4.547
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.800
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.635

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.281
SRR2868004	Drought Stress (root)	2.546
SRR2967015	Control (root)	3.522

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.057
SRR9715740	Leaf	7.936
SRR9715741	Leaf	8.341
SRR9715739	Root	0.352
SRR9715742	Root	2.632
SRR9715743	Root	2.396

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.724
SRR8749028	MeJA induced 9h	3.657
SRR8749029	MeJA induced 9h	1.144
SRR8749030	Uninduced	0.352
SRR8749031	Uninduced	0.190
SRR8749032	Uninduced	0.275

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.859
SRR8400027	Control - Root	2.231