Gene detail information of Glyur000162s00009916.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_004501386.1 | 0 | PREDICTED: phospholipase D Z-like [Cicer arietinum] |
| COG | NP_901382.1 | 8.00E-14 | phospholipase D/ transphosphatidylase [Chromobacterium violaceum ATCC 12472] |
| trEMBL | tr|A0A072VCN8|A0A072VCN8_MEDTR | 0 | Phospholipase D Y {ECO:0000313|EMBL:KEH35900.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00162 | 176788 | 180665 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K16860 | PLD3_4 | EC:3.1.4.4 | Glycerophospholipid metabolism | map00564 |
| Ether lipid metabolism | map00565 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000162s00009916.1 | PF13091.1 | PLDc_2 | 67 | 217 | 1.50E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.569 |
| SRR1783600 | control | 5.854 |
| SRR1783602 | moderate drought stress | 7.002 |
| SRR1811619 | moderate drought stress | 7.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.528 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.462 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.412 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.411 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.944 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.751 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.428 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.717 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.437 |
| SRR2868004 | Drought Stress (root) | 4.406 |
| SRR2967015 | Control (root) | 5.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.391 |
| SRR9715740 | Leaf | 2.866 |
| SRR9715741 | Leaf | 3.374 |
| SRR9715739 | Root | 3.591 |
| SRR9715742 | Root | 4.495 |
| SRR9715743 | Root | 3.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.084 |
| SRR8749028 | MeJA induced 9h | 0.129 |
| SRR8749029 | MeJA induced 9h | 0.203 |
| SRR8749030 | Uninduced | 0.078 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.871 |
| SRR8400027 | Control - Root | 12.560 |