Gene detail information of Glyur000162s00009912.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10870.1 | 2.00E-74 | chorismate mutase 2 |
| NR | AES73547.2 | 1.67E-140 | chorismate mutase [Medicago truncatula] |
| Swissprot | tr|Q9S7H4|CM2_ARATH | 7.00E-98 | Chorismate mutase 2 |
| trEMBL | tr|G7J9U7|G7J9U7_MEDTR | 6.00E-141 | Chorismate mutase {ECO:0000313|EMBL:AES73547.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00162 | 163987 | 166143 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01850 | E5.4.99.5 | EC:5.4.99.5 | Biosynthesis of amino acids | map01230 |
| Phenylalanine, tyrosine and tryptophan biosynthesis | map00400 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.090 |
| SRR1783600 | control | 0.136 |
| SRR1783602 | moderate drought stress | 0.185 |
| SRR1811619 | moderate drought stress | 0.125 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.786 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.587 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.608 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.557 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.442 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.667 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.838 |
| SRR2868004 | Drought Stress (root) | 0.449 |
| SRR2967015 | Control (root) | 1.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.854 |
| SRR9715740 | Leaf | 7.010 |
| SRR9715741 | Leaf | 9.531 |
| SRR9715739 | Root | 0.061 |
| SRR9715742 | Root | 0.448 |
| SRR9715743 | Root | 0.474 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.134 |
| SRR8749028 | MeJA induced 9h | 0.009 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.043 |
| SRR8749031 | Uninduced | 0.021 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.105 |
| SRR8400027 | Control - Root | 2.032 |