Gene detail

Gene detail information of Glyur000162s00009902.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G01120.1	5.00E-14	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
NR	NP_001265950.1	6.19E-16	cystathionine gamma-synthase, chloroplastic-like [Cicer arietinum]
COG	YP_003267806.1	2.00E-09	cystathionine gamma-synthase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|P55217\|CGS1_ARATH	9.00E-16	Cystathionine gamma-synthase 1, chloroplastic {ECO:0000305} (Precursor)
trEMBL	tr\|L0EK12\|L0EK12_CICAR	2.00E-16	Cystathionine gamma-synthase {ECO:0000313\|EMBL:AGA60136.1}

Sequence

Transcript Sequence

>Glyur000162s00009902.1
GTAGATTAAAAAAAAAACACCAAGACGGGAAGGGTGACATTTTGGCAATAAAAGGGGAAAGGTGTGAGCACTGAGCACTGCCGTCATTGAAAAAAAAAGGATTGACCAAAAAAAAAAAAAGAAGGCCAAGACCGGAGAAGTGTAGCATTTTGGCAATAAAAGGGGAAAGGTGTGAGCATTGTCGTCATTATGAAATTCAATCGTGAAATTCGAAAAAAAAAATAGAGAGAACCCGCCAAAACACGGGACTAGGTAGCAGCATGTGACCCAAACAGAATCGACACTTCTCCGGTTCGATGAAACCACCACCAACGGCATTGACGTTGCTTTCTTTGGCCTCTTTTACGGCCTCGATCAATTCTATTTCGGNGAGTCAATCAAATAATCCTTCCATTTCGTTCAAATAATCCTCAGCCTTCGATCAAATAATCCCAATATTTATCGCCGGCGCCGGTTCAAGATTCAAGACAACCTCCGGAAGATCGAACAACGGAACGCCTTCTAATCCGACAGGGAAGAAATCCGACAAGTTCGGCCACCGCCTCACCAACCTCACTACACCTGTCGATATTTCTTGCGCCTGAGGGATTGGCTTGCGTCGAGGGTTTGATGGAGAAGAGGTTCTTGGCAGGAAGAACCGGCGCCGGCGAGGATTATTTGATCGAAGATTCAAGATTCAAGAAGGCCTCGTTCACAATTTAGATGTCATTATTATTAAAGTGGCTTTTATTTGCTTAGATGTTATTATTACTGGTTAGTTAGGTTGTTTGCTAAGTTGATTGGTTTCGTATTTGGGTTATGCAGCTGAAAGACTAGGTAGGGGGATCACAACTGATGCAATTACCAACTGATCGCAGCTGAAAGACAAGATGGAAACTGCAGTCAACATAGGGTATGCTTGTAGTTTACTTAGACAAGACATGAAAAAGATAGTGATCACACTTGATTCACCGGATATCTTATCGCTTGAGAAACAAGGGAACAAGGAGGCTCTAGTAAAGGTACATGACCTTGGAAGTCTTTTGGCATCCAATTTCTCTCGCATTATTTTATATCTTTGATACGATGATTGCTTAAGCCTCTCTTGAAAGCATTGAGAAGCAAATTAGAGAGGGAATGTCGCCAATCAAGTCCGCAAAAGAGAGTTCCAGTACAGAAAAATGAAGTTCTTCATCATTTGGCCTGATAATTGATGGGAAGTCCTTGGACTATTCTCGTAACAAGATTTTGGAGAAGTCCTTCTTTGAGCTGGCAATTAATTGCGCTTCTGTCATATGTTGCCGATCTTCACCAAAACAGAAAGCCCGTGCTGTCGTGTTACAAGATTGGTGAAATTGGGAACGGGGAAGACAATCTTATCTATTGGCGATAGGGCAAATGATGTTGGCATGCTTCAAGAGGCTGATATTGGAGTTGGCATCAGAGGTGCTGAAGGGATGCAGGTCTAAAGATACATTTTCTTATACCTATTTGGGCGCTATGGAAACCCAACCAGTACGGTTTTTGAAAAGAAAATAAGAGCATGAAGGATGAAACAAATACCCGTTCTTTATGATGCCTAACATGTGAAATGCATGTTCAGAAGTCTGAACCCACTAATGCTACCAAAGTCAGAATCCAATGGACCAAGTTTGCTCTGCATTGATGGTACATTTGCAACACCTTTGAACCAGAAGGCCCTTGCCCTTGGTGCTGATCTGATTTTGCACTCTTGTACAAAGTACATGGGTGGATATTATGACAACAATGCATTGCTAGCACGCTGTCTAATTAAATGGAAGTTGGAACCTTCACAATTTTTAAATATGACACCCAATGAAGTAAAGTTCGCTATACCTGATAGTGATGAAGAATTATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00162	99998	103218	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01739	metB	EC:2.5.1.48	Biosynthesis of amino acids	map01230
			Sulfur metabolism	map00920
			Cysteine and methionine metabolism	map00270
			Selenocompound metabolism	map00450

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000162s00009902.1	PF01053.15	Cys_Met_Meta_PP	19	56	6.40E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.530
SRR1783600	control	4.768
SRR1783602	moderate drought stress	1.912
SRR1811619	moderate drought stress	1.845

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.218
DRR006520	Root Summer glycyrrhizin high producing strain	1.327
DRR006521	Root Winter glycyrrhizin high producing strain	1.449
DRR006522	Root Winter glycyrrhizin high producing strain	1.783
DRR006523	Root Summer glycyrrhizin low producing strain	1.008
DRR006524	Root Summer glycyrrhizin low producing strain	1.074
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.463
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.589

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.291
SRR2868004	Drought Stress (root)	5.263
SRR2967015	Control (root)	5.214

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.443
SRR9715740	Leaf	0.283
SRR9715741	Leaf	0.532
SRR9715739	Root	0.168
SRR9715742	Root	0.706
SRR9715743	Root	0.757

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.657
SRR8749028	MeJA induced 9h	1.143
SRR8749029	MeJA induced 9h	0.130
SRR8749030	Uninduced	0.570
SRR8749031	Uninduced	0.077
SRR8749032	Uninduced	0.147

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.212
SRR8400027	Control - Root	8.414