Gene detail information of Glyur000162s00009901 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G31890.2 | 1.00E-106 | ARM repeat superfamily protein |
| NR | XP_003603305.1 | 0 | U-box domain-containing protein [Medicago truncatula] |
| Swissprot | tr|Q5VRH9|PUB12_ORYSJ | 7.00E-14 | U-box domain-containing protein 12 |
| trEMBL | tr|G7J9V6|G7J9V6_MEDTR | 0 | Armadillo/beta-catenin-like repeat protein {ECO:0000313|EMBL:AES73556.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00162 | 93047 | 95013 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 76.923 |
| SRR1783600 | control | 77.566 |
| SRR1783602 | moderate drought stress | 43.151 |
| SRR1811619 | moderate drought stress | 42.716 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.881 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 33.678 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.086 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.957 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.254 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.419 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.737 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.880 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.738 |
| SRR2868004 | Drought Stress (root) | 8.567 |
| SRR2967015 | Control (root) | 10.057 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.502 |
| SRR9715740 | Leaf | 0.303 |
| SRR9715741 | Leaf | 0.451 |
| SRR9715739 | Root | 193.209 |
| SRR9715742 | Root | 20.007 |
| SRR9715743 | Root | 51.509 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.624 |
| SRR8749028 | MeJA induced 9h | 0.966 |
| SRR8749029 | MeJA induced 9h | 3.029 |
| SRR8749030 | Uninduced | 0.085 |
| SRR8749031 | Uninduced | 0.084 |
| SRR8749032 | Uninduced | 0.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 122.280 |
| SRR8400027 | Control - Root | 126.381 |