Gene detail

Gene detail information of Glyur000162s00009900

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G25140.1	casein lytic proteinase B4
NR	XP_004501376.1	PREDICTED: chaperone protein ClpB4, mitochondrial-like [Cicer arietinum]
COG	YP_007127087.1	ATP-dependent chaperone ClpB [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q8VYJ7\|CLPB4_ARATH	Chaperone protein ClpB4, mitochondrial (Precursor)
trEMBL	tr\|G7J9V8\|G7J9V8_MEDTR	Chaperone ClpB, putative {ECO:0000313\|EMBL:AES73558.1}

Sequence

Transcript Sequence

>Glyur000162s00009900.1
TCCATTTCTAGCAGCTTCTTTTGCCCCTTCCCCAAGCTTCTAGAGACACCCCACTCTCTTGTGTTCATTTTGAGAAGTGAAGTGAAGTGAACCCCGCTGCAACCGCACACACAGAACTCTGAATAAAACTGAACGCAGCTCAATAATCAACGCTCTTGCTTCGTGTTACCTTCTAATTCTATGGCAACGAGAAGAACTCCGACGCTAACCAAATCCGTCTTCGTCGCCGTAACTTCGTCCAGAACTAGATCCCCTCTCTCTCCCTCTCGCTCCGCTCCACTATTCTCCGTCCTCACTNCCCATGCTTCTGAGAATGCGAGAAATCCCCTTTCGCGGCCTCAGATTATGGACACGCTCGCAGCCACCAATGTTGCTTCCGCCAAGTTCCTCTCTCGCTCTTTCACTCGCAACTTCCACGCCTCTAACCCCTCCCGCCGCTCTGCTGGAACCTCTCAGATAACGCAGACGGAGTTCACCGAAATGGCATGGGAGGGCATTCTTGGTGCTGTTGATGCTGCACGAATTAGTAAACAACAAATTGTGGAATCTGAGCATTTAATGAAAGCCCTCTTGGAGCAAAAGGATGGTTTGGCTCGAAGGATATTTACTAAGGCAGGATTGGACAACACGTCAGTTCTACAGGCTACTGATAACTTTATAGCTCAGCAACCTAAGGTTACAGGTGACACTTCTGGTCCTGTATTGGGTTCGCATCTTAGCTCCCTCTTGGACAATTCTCGAAAGCACAAGAAAGAAATGGGTGATGAATATGTGTCTGTGGAGCACCTTTTGCTAGCATTTCATTCAGATAAGAGGTTTGGGCAACAGTTATTTAAGAATCTTCAGCTTAGCGAGAAGACTTTGAAGGATGCCGTACAGGCTGTTCGTGGAAGTCAAAGAGTAACCGATCAAAATCCTGAGGGGAAATATGAAGCACTGGACAAGTATGGAAATGACCTGACTGAACTTGCTAGGCGTGGCAAGCTTGATCCTGTCATAGGTCGAGATGATGAAATTCGACGCTGTATCCAGATATTGTCAAGGAGAACGAAAAACAATCCAGTTATTATTGGTGAACCTGGTGTGGGGAAGACTGCAATTGCTGAAGGATTAGCTCAACGTATAGTGCGTGGAGATGTTCCAGAGCCATTGATGAACCGGAAGTTGATCTCCCTCGATATGGGTTCATTGCTTGCTGGTGCCAAGTTTCGTGGAGATTTTGAAGAAAGGTTGAAAGCTGTTCTGAAGGAAGTTACAGCATCAAATGGGCAAATAATTTTGTTTATTGATGAAATTCATACTGTTGTAGGTGCAGGGGCTACAAGTGGTGCAATGGATGCTGGGAACTTGTTGAAGCCAATGCTTGGAAGAGGTGAACTTCGATGTATAGGAGCAACTACACTGAATGAGTATAGAAAATACATTGAGAAGGATCCTGCACTTGAGCGTAGATTTCAACAAGTATTTTGCAGTCAACCATCTGTTGAAGATACAATATCCATTCTTCGTGGGTTGCGTGAGCGCTATGAATTGCATCATGGAGTCAAAATATCAGATAGTGCACTTGTTTCAGCTGCAGTTCTTGCGGATCGATACATCACAGAGCGCTTCCTACCNGACAAAGCTATTGATCTTGTNGATGAAGCTGCTGCAAAGCTGAAGATGGAGATCACCTCTAAGCCTACAGAATTGGATGAGGTAGACAGAGCGGTCTTGAAATTGGAGATGGAAAAACTCTCTTTGAAAAATGACACCGACAAGGCATCTAAAGAAAGATTAAATAAGCTTGAAAATGATTTGAGTTTACTTAAACAGAAGCAAAAAGAATTGACAGAACAATGGGACAGTGAAAAAGTTTTAATGACTCGAATAAGATCAATCAAAGAAGAGATAGATAGAGTCAACCTAGAGATGGAAGCTGCTGAGCGTGATTATGACCTNAACCGTGCTGCTGAGCTTAAGTATGGAACCTTGATGTCCCTTCAGCGCCAATTAGAAGAAGCTGAAAAGAATCTAGCCGACTTCCAAAAGTCTGGACAATCTTTACTTCGAGAAGAGGTCACTGACCTTGATATTACCGAGATTGTAAGCAAATGGACCGGTATACCATTATCCAACCTCCAACAAACAGAGAGAGAAAAGTTAGTTTTGCTGGAACAGGTTCTTCATAAGAGGGTGGTTGGTCAGGATATTGCTGTAAAATCCGTGGCTGATGCAATTCGCCGTTCAAGGGCTGGATTATCTGACCCAAATCGGCCAATTGCAAGCTTCATGTTCATGGGTCCAACTGGTGTTGGCAAAACTGAGCTTGCCAAGGCTTTGGCTGGTTACTTGTTTAACACAGAAAATGCTCTTGTTAGAATTGATATGAGTGAGTACATGGAGAAACATGCTGTTTCACGTTTAGTTGGGGCTCCTCCTGGTTATGTTGGTTATGAAGAAGGTGGTCAGCTAACTGAAGTGATCCGAAGAAGACCCTACTCTGTGGTTCTATTTGATGAAATAGAGAAGGCACATCATGACGTCTTCAATATCTTGTTACAGTTGTTGGATGATGGAAGGATTACTGATTCTCAAGGAAGAACTGTTAGCTTCACAAATAGTGTTGTGATTATGACTTCAAACATTGGCTCCCATTACATACTTGAAACCCTTCGTAATACACAAGATGACAAAATTGCCGTTTATGATCAAATGAAGAGACAAGTTGTTGAGTTGGCTAGGCAAACATTCCGCCCAGAGTTCATGAATCGCATTGACGAGTATATTGTTTTCCAGCCTCTGGATTCCAAACAGATCAGCAAAATAGTAGAGCTTCAGATGGAACGAGTGAAGAACAGGCTCAAGCAGAAGAAAATTGATCTTCATTACACACAAGAAGCTGTTAAACTTCTTGGAGTATTGGGTTTTGATCCAAATTTTGGGGCAAGACCAGTTAAAAGAGTGATACAACAATTGGTTGAAAATGAAATTGCTATGGGAATTCTGAGGGGGGATTTCAAAGAAGAGGACTCGATCATTGTTGATGCCGATGACACTCCATCGGGCAAGGAACGTCCTCCTCTAAATAGATTGCTTATCAAGAAGCAGGACAACCTTGTTGCGGATGCTGCCATGGTTGCCAATGACTAGTTTGGCTTACTGGAGACTCACATTACAGCGTCACTTGGGGCCTAGACTTTGTCATTGAAATTTTATTTACGGGTCTCTTTCTAACCGGTATCTTAGAGATATCTTGT

Protein Sequence

>Glyur000162s00009900.1
MATRRTPTLTKSVFVAVTSSRTRSPLSPSRSAPLFSVLTXHASENARNPLSRPQIMDTLAATNVASAKFLSRSFTRNFHASNPSRRSAGTSQITQTEFTEMAWEGILGAVDAARISKQQIVESEHLMKALLEQKDGLARRIFTKAGLDNTSVLQATDNFIAQQPKVTGDTSGPVLGSHLSSLLDNSRKHKKEMGDEYVSVEHLLLAFHSDKRFGQQLFKNLQLSEKTLKDAVQAVRGSQRVTDQNPEGKYEALDKYGNDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLMNRKLISLDMGSLLAGAKFRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGATSGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVFCSQPSVEDTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEITSKPTELDEVDRAVLKLEMEKLSLKNDTDKASKERLNKLENDLSLLKQKQKELTEQWDSEKVLMTRIRSIKEEIDRVNLEMEAAERDYDLNRAAELKYGTLMSLQRQLEEAEKNLADFQKSGQSLLREEVTDLDITEIVSKWTGIPLSNLQQTEREKLVLLEQVLHKRVVGQDIAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAGYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVIRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNSVVIMTSNIGSHYILETLRNTQDDKIAVYDQMKRQVVELARQTFRPEFMNRIDEYIVFQPLDSKQISKIVELQMERVKNRLKQKKIDLHYTQEAVKLLGVLGFDPNFGARPVKRVIQQLVENEIAMGILRGDFKEEDSIIVDADDTPSGKERPPLNRLLIKKQDNLVADAAMVAND

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00162	83442	90662	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0009408 response to heat

GO:0016485 protein processing

GO:0019538 protein metabolic process

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000162s00009900.1	PF02861.15	Clp_N	109	160	2.50E-12
Glyur000162s00009900.1	PF02861.15	Clp_N	188	237	4.90E-12
Glyur000162s00009900.1	PF00004.24	AAA	296	429	9.60E-14
Glyur000162s00009900.1	PF07724.9	AAA_2	692	861	7.50E-54
Glyur000162s00009900.1	PF10431.4	ClpB_D2-small	868	947	8.30E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.443
SRR1783600	control	25.548
SRR1783602	moderate drought stress	42.276
SRR1811619	moderate drought stress	42.047

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.386
DRR006520	Root Summer glycyrrhizin high producing strain	25.359
DRR006521	Root Winter glycyrrhizin high producing strain	19.052
DRR006522	Root Winter glycyrrhizin high producing strain	18.664
DRR006523	Root Summer glycyrrhizin low producing strain	22.914
DRR006524	Root Summer glycyrrhizin low producing strain	22.954
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.243
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.106

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.036
SRR2868004	Drought Stress (root)	14.421
SRR2967015	Control (root)	11.443

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.861
SRR9715740	Leaf	15.164
SRR9715741	Leaf	15.471
SRR9715739	Root	1.825
SRR9715742	Root	18.470
SRR9715743	Root	14.818

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.930
SRR8749028	MeJA induced 9h	20.800
SRR8749029	MeJA induced 9h	8.463
SRR8749030	Uninduced	1.989
SRR8749031	Uninduced	1.103
SRR8749032	Uninduced	1.161

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.024
SRR8400027	Control - Root	18.841