Gene detail information of Glyur000162s00009892.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80730.1 | 9.00E-29 | zinc-finger protein 1 |
| NR | XP_003527778.2 | 1.57E-87 | PREDICTED: zinc finger protein 1-like [Glycine max] |
| Swissprot | tr|Q42485|ZFP1_ARATH | 6.00E-38 | Zinc finger protein 1 |
| trEMBL | tr|I1K8P9|I1K8P9_SOYBN | 9.00E-88 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G06750.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00162 | 29281 | 30159 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
| EAR motif-containing Proteins | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.103 |
| SRR1783600 | control | 7.440 |
| SRR1783602 | moderate drought stress | 6.508 |
| SRR1811619 | moderate drought stress | 6.779 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.559 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.643 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.539 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.798 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.317 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.633 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.439 |
| SRR2868004 | Drought Stress (root) | 28.427 |
| SRR2967015 | Control (root) | 40.559 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.474 |
| SRR9715740 | Leaf | 0.152 |
| SRR9715741 | Leaf | 0.504 |
| SRR9715739 | Root | 2.690 |
| SRR9715742 | Root | 8.230 |
| SRR9715743 | Root | 6.395 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.733 |
| SRR8749028 | MeJA induced 9h | 3.963 |
| SRR8749029 | MeJA induced 9h | 8.975 |
| SRR8749030 | Uninduced | 0.982 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.393 |
| SRR8400027 | Control - Root | 33.130 |