Gene detail information of Glyur000161s00011292 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_003533161.1 | 0 | PREDICTED: uncharacterized protein LOC100804088 isoform 1 [Glycine max] |
| COG | YP_003890420.1 | 2.00E-78 | 4Fe-4S ferredoxin [Cyanothece sp. PCC 7822] |
| trEMBL | tr|I1L0Q9|I1L0Q9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G04010.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00161 | 285065 | 289280 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000161s00011292.1 | PF13187.1 | Fer4_9 | 152 | 207 | 3.00E-06 |
| Glyur000161s00011292.1 | PF12617.3 | LdpA_C | 224 | 296 | 5.70E-13 |
| Glyur000161s00011292.1 | PF12617.3 | LdpA_C | 303 | 399 | 4.80E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.451 |
| SRR1783600 | control | 1.254 |
| SRR1783602 | moderate drought stress | 3.556 |
| SRR1811619 | moderate drought stress | 3.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.323 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.431 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.641 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.784 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.453 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.464 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.781 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.730 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.062 |
| SRR2868004 | Drought Stress (root) | 2.379 |
| SRR2967015 | Control (root) | 2.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.597 |
| SRR9715740 | Leaf | 35.852 |
| SRR9715741 | Leaf | 27.936 |
| SRR9715739 | Root | 1.104 |
| SRR9715742 | Root | 3.594 |
| SRR9715743 | Root | 3.204 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.732 |
| SRR8749028 | MeJA induced 9h | 1.179 |
| SRR8749029 | MeJA induced 9h | 1.613 |
| SRR8749030 | Uninduced | 1.514 |
| SRR8749031 | Uninduced | 1.483 |
| SRR8749032 | Uninduced | 1.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.913 |
| SRR8400027 | Control - Root | 8.697 |