Gene detail information of Glyur000161s00011281 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G56430.1 | 6.00E-94 | nicotianamine synthase 4 |
| NR | AFK41752.1 | 5.26E-178 | unknown [Lotus japonicus] |
| COG | NP_275817.1 | 2.00E-07 | hypothetical protein MTH675 [Methanothermobacter thermautotrophicus str. Delta H] |
| Swissprot | tr|Q9XGI7|NAS_SOLLC | 7.00E-123 | Nicotianamine synthase |
| trEMBL | tr|I3SNB0|I3SNB0_LOTJA | 2.00E-178 | Uncharacterized protein {ECO:0000313|EMBL:AFK41752.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00161 | 255181 | 256143 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000161s00011281.1 | PF03059.11 | NAS | 3 | 276 | 1.30E-124 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.455 |
| SRR1783600 | control | 0.458 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.539 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.410 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.927 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.948 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.220 |
| SRR2868004 | Drought Stress (root) | 23.643 |
| SRR2967015 | Control (root) | 3.721 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.258 |
| SRR9715742 | Root | 2.394 |
| SRR9715743 | Root | 2.120 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.063 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.034 |
| SRR8400027 | Control - Root | 0.075 |