Gene detail information of Glyur000161s00011268 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16260.1 | 8.00E-114 | Glycosyl hydrolase superfamily protein |
| NR | BAE53382.1 | 0 | beta-1,3-glucanase [Sesbania rostrata] |
| Swissprot | tr|P23535|E13B_PHAVU | 0 | Glucan endo-1,3-beta-glucosidase, basic isoform (Precursor) |
| trEMBL | tr|I7GGY8|I7GGY8_SESRO | 0 | Beta-1,3-glucanase {ECO:0000313|EMBL:BAE53382.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00161 | 202943 | 204376 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000161s00011268.1 | PF00332.13 | Glyco_hydro_17 | 1 | 307 | 4.30E-131 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.991 |
| SRR1783600 | control | 1.024 |
| SRR1783602 | moderate drought stress | 0.702 |
| SRR1811619 | moderate drought stress | 0.733 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.186 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.112 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.422 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 26.531 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 67.568 |
| SRR2868004 | Drought Stress (root) | 117.934 |
| SRR2967015 | Control (root) | 79.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 56.243 |
| SRR9715740 | Leaf | 9.054 |
| SRR9715741 | Leaf | 71.532 |
| SRR9715739 | Root | 2.599 |
| SRR9715742 | Root | 1.577 |
| SRR9715743 | Root | 1.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 68.606 |
| SRR8749028 | MeJA induced 9h | 489.121 |
| SRR8749029 | MeJA induced 9h | 114.585 |
| SRR8749030 | Uninduced | 728.526 |
| SRR8749031 | Uninduced | 1983.106 |
| SRR8749032 | Uninduced | 707.907 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.281 |
| SRR8400027 | Control - Root | 17.301 |