Gene detail

Gene detail information of Glyur000161s00011267

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16260.1	6.00E-110	Glycosyl hydrolase superfamily protein
NR	ABD32327.1	0	Glycoside hydrolase, family 17 [Medicago truncatula]
Swissprot	tr\|Q03467\|E13B_PEA	0	Glucan endo-1,3-beta-glucosidase (Precursor)
trEMBL	tr\|Q2HU14\|Q2HU14_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK39879.1}

Sequence

Transcript Sequence

>Glyur000161s00011267.1
AAAGAATAGTCTAAGACACGATCAAGTTTTGAGTTCTAGCACTACACTTTGCTTTGTGCTATAGTAATGACCACCTCCTTCTTCGCAACAAGTAACAGCAGGGCTGCAATGTCTTCTCTTCTGCTCCTGTTATTGGTTATATTTACAGTAAATCTTCGCATGACTGATGCTCAAATAGGTGTTTGTTATGGCATGATGGGAAACAATCTACCATCACATCAGGAAGTAGTGGATCTTTGCAAAGCAAACAACATCANGAGAATGAGGCTCTACGATCCAAACCAAGCTGCTCTAGAAGCACTAAGGAACTCAGGTCTCGAGCTCATGCTGGGCGTACCCAACCCAGACCTCCAAAACCTCGCCAACAACGCCGACGCCGCAATTCAATGGGTACAAAGGAACGTGTTGAACTTCTACCCCAGTGTCAACATCAAATACATCGCGGTAGGCAACGAAGTAAGCCCCGTTGGAGGGTCCTCCCAATTCGCAAGCTTCGTTCTCCCCGCAATCCAAAACATATACCAAGCCATAAGAGCCAAGGGTCTTCACGACCAAATCAAAGTCTCAACCGCTATTGACATGACACTAATAGGAACCTCGTATCCACCATCGAAGGGTTCCTTTAGAAGCGATGTGAGGTCGTATTTGGACCCAATCATAGGCTACTTGGTATACGCAAACGCGCCTTTGTTTGCAAATATTTACCCTTACTTTAGNTANTCGGNTAACCCACGTGACATCTCTCTTCCTTATGCTTTGTTCACCTCTCCAAACGTTGTCGTTTGGGACGGTTCGAGAGGGTACCAGAACCTGTTTGATGCGTTGTTGGATGCGTTGCACGCGTCGATTGATGCGACAGGGATTGGGTATGTTAAGGTTGTTGTGTCGGAGAGTGGGTGGCCATCGGATGGTGGGTTTGCNGCTACGTATGACAATGCGCGTGTTTTCCTTGAGAATTTGATTCGTCACGTGAAAGGAGGAACACCGTTGAGGCCCTCTGCTGGGCCAATTGAGACTTATATATTTGGGTTGTTTGATGAGAATCAGAAGAGCCCGGANCTGGAGAAACATTTTGGGGTGTTTTATCCAGACAAGCAGAAGAAGTATCCGTTTGGGTTTGGCAGGGAACGCAGCAGCAACTGGGATATTATTGCTGAACCTGCAGTGTTCAATGTATCTGTCCCTCTCAAGAGCGACACTTGATGATGTAATTAAGGACAGGTTGCTCTATCTTGTATCTAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00161	196293	214231	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000161s00011267.1	PF00332.13	Glyco_hydro_17	37	351	3.70E-131

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	37.770
SRR1783600	control	37.802
SRR1783602	moderate drought stress	48.124
SRR1811619	moderate drought stress	47.720

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.034
DRR006520	Root Summer glycyrrhizin high producing strain	1.032
DRR006521	Root Winter glycyrrhizin high producing strain	142.425
DRR006522	Root Winter glycyrrhizin high producing strain	138.211
DRR006523	Root Summer glycyrrhizin low producing strain	4.794
DRR006524	Root Summer glycyrrhizin low producing strain	4.964
DRR006525	Leaf Summer glycyrrhizin high producing strain	115.513
DRR006526	Leaf Summer glycyrrhizin high producing strain	116.122

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	106.258
SRR2868004	Drought Stress (root)	151.776
SRR2967015	Control (root)	264.583

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	122.524
SRR9715740	Leaf	84.900
SRR9715741	Leaf	98.291
SRR9715739	Root	216.416
SRR9715742	Root	149.479
SRR9715743	Root	161.763

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	331.608
SRR8749028	MeJA induced 9h	1878.200
SRR8749029	MeJA induced 9h	468.279
SRR8749030	Uninduced	1789.707
SRR8749031	Uninduced	1813.144
SRR8749032	Uninduced	882.684

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	118.339
SRR8400027	Control - Root	74.585