Gene detail information of Glyur000161s00011264 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G16980.1 | 4.00E-59 | RNA polymerases M/15 Kd subunit |
| NR | NP_001235803.1 | 2.71E-78 | uncharacterized protein LOC100305979 [Glycine max] |
| COG | YP_001435441.1 | 6.00E-11 | DNA-directed RNA polymerase subunit M [Ignicoccus hospitalis KIN4/I] |
| Swissprot | tr|Q6NLH0|RPB9A_ARATH | 2.00E-75 | DNA-directed RNA polymerases II, IV and V subunit 9A |
| trEMBL | tr|C6SXF5|C6SXF5_SOYBN | 1.00E-78 | DNA-directed RNA polymerase subunit {ECO:0000256|PIRNR:PIRNR005586, ECO:0000256|RuleBase:RU004351} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00161 | 165946 | 168631 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000161s00011264.1 | PF02150.11 | RNA_POL_M_15KD | 4 | 38 | 3.30E-12 |
| Glyur000161s00011264.1 | PF01096.13 | TFIIS_C | 75 | 113 | 5.80E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.781 |
| SRR1783600 | control | 18.507 |
| SRR1783602 | moderate drought stress | 19.232 |
| SRR1811619 | moderate drought stress | 19.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 55.228 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 54.757 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 40.581 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 40.162 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 41.795 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 41.810 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.465 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.453 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 35.730 |
| SRR2868004 | Drought Stress (root) | 29.552 |
| SRR2967015 | Control (root) | 34.909 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 24.447 |
| SRR9715740 | Leaf | 27.114 |
| SRR9715741 | Leaf | 20.848 |
| SRR9715739 | Root | 16.342 |
| SRR9715742 | Root | 18.647 |
| SRR9715743 | Root | 20.780 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 44.191 |
| SRR8749028 | MeJA induced 9h | 16.846 |
| SRR8749029 | MeJA induced 9h | 21.811 |
| SRR8749030 | Uninduced | 23.588 |
| SRR8749031 | Uninduced | 8.398 |
| SRR8749032 | Uninduced | 13.696 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 42.023 |
| SRR8400027 | Control - Root | 40.404 |