Gene detail information of Glyur000161s00011261 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16160.2 | 2.00E-50 | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein |
| NR | XP_003533195.1 | 2.61E-109 | PREDICTED: outer envelope pore protein 16-2, chloroplastic-like [Glycine max] |
| Swissprot | tr|Q0WMZ5|OP162_ARATH | 1.00E-77 | Outer envelope pore protein 16-2, chloroplastic |
| trEMBL | tr|I1L0S5|I1L0S5_SOYBN | 1.00E-109 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G04250.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00161 | 155042 | 157471 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000161s00011261.1 | PF02466.14 | Tim17 | 34 | 178 | 5.10E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.841 |
| SRR1783600 | control | 0.887 |
| SRR1783602 | moderate drought stress | 0.959 |
| SRR1811619 | moderate drought stress | 0.824 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.991 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.529 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.581 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.409 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.392 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.489 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.292 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.917 |
| SRR2868004 | Drought Stress (root) | 0.592 |
| SRR2967015 | Control (root) | 0.824 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.236 |
| SRR9715740 | Leaf | 0.949 |
| SRR9715741 | Leaf | 2.060 |
| SRR9715739 | Root | 1.901 |
| SRR9715742 | Root | 0.759 |
| SRR9715743 | Root | 2.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.952 |
| SRR8749028 | MeJA induced 9h | 0.735 |
| SRR8749029 | MeJA induced 9h | 0.601 |
| SRR8749030 | Uninduced | 0.105 |
| SRR8749031 | Uninduced | 0.176 |
| SRR8749032 | Uninduced | 0.278 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.887 |
| SRR8400027 | Control - Root | 2.134 |