Gene detail information of Glyur000161s00011258 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06680.1 | 4.00E-25 | Ribosomal L29e protein family |
| NR | XP_003529537.1 | 6.36E-36 | PREDICTED: 60S ribosomal protein L29-1-like [Glycine max] |
| Swissprot | tr|Q9M7X7|RL291_ARATH | 4.00E-32 | 60S ribosomal protein L29-1 |
| trEMBL | tr|I1MRP4|I1MRP4_SOYBN | 2.00E-36 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G37060.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00161 | 129033 | 130019 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000161s00011258.1 | PF01779.12 | Ribosomal_L29e | 3 | 42 | 8.10E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.755 |
| SRR1783600 | control | 28.370 |
| SRR1783602 | moderate drought stress | 35.891 |
| SRR1811619 | moderate drought stress | 35.423 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 128.350 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 126.738 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 62.975 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 61.947 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 115.987 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 116.267 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 56.392 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 55.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 161.192 |
| SRR2868004 | Drought Stress (root) | 119.082 |
| SRR2967015 | Control (root) | 101.253 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 80.778 |
| SRR9715740 | Leaf | 91.174 |
| SRR9715741 | Leaf | 73.750 |
| SRR9715739 | Root | 18.420 |
| SRR9715742 | Root | 42.686 |
| SRR9715743 | Root | 32.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 162.336 |
| SRR8749028 | MeJA induced 9h | 52.542 |
| SRR8749029 | MeJA induced 9h | 115.084 |
| SRR8749030 | Uninduced | 37.249 |
| SRR8749031 | Uninduced | 25.398 |
| SRR8749032 | Uninduced | 32.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 145.212 |
| SRR8400027 | Control - Root | 124.617 |