Gene detail

Gene detail information of Glyur000161s00011256.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G16150.1	calmodulin binding;transcription regulators
NR	AES65041.2	calmodulin-binding transcription activator [Medicago truncatula]
Swissprot	tr\|O23463\|CMTA5_ARATH	Calmodulin-binding transcription activator 5
trEMBL	tr\|G7IMU6\|G7IMU6_MEDTR	Calmodulin-binding transcription activator {ECO:0000313\|EMBL:AES65041.2}

Sequence

Transcript Sequence

>Glyur000161s00011256.1
GTATTTTGTTTTCCGTTTTCTGTTCACAACTATTGTTTGATTCTGTTTTTGTTTTATGTATGTGACTGTTCTCTTTTGCTTGATCGTGTGCTTGCTGACCTTTTGTTTTTTCTTTTCTTTAAGGTTGTAGGGTTATGCTGTTGTTGGGTTTGTGGCGAAAGAAGAAGGAATTCCTCATAGGTTTCATCTGTGATGGCACACAACTTAACAGGACATCTAGTTGGTTCAGAGATACATGGCTTCCACACGTTGCGGGATCTGGATGTTGGGAATACTATGGAGGAAGCAAAAAGCAGATGGCTTCGACCCAATGAAATTCATGCCATACTCTGCAATTACAAATATTTTACGATCCACGTCAAGCCAGTGAATTTGCCGAAAAGTGGTACTATTGTACTATTTGACCGCAAGATGCTTAGGAACTTCCGGAAAGATGGGCACAACTGGAAAAAGAAAAATGATGGGAAAACTGTTAAAGAAGCTCATGAACACTTAAAAGTTGGTAACGAAGAAAGGATCCACGTATATTATGCACATGGCCAAGATAACCCAAGCTTTGTTCGCAGATGTTATTGGTTGCTTGATAAGAGTTTGGAGCACATAGTCCTTGTTCATTATCGTGAAACACAGGAGTCTCAAGGTTCTCCTGTTACACCTGTAAATTCAAATTCAAATTCTATCTCTGATCCAACAGCATCGTGGATTTTGTCCGAAGACTTGGATTCTGGGACCAACAGTACTTATACTGATGGGCTCAATGACAATTTAACAGTCAAAAGCCATGAACAGAGGCTTCATGAGCTTAATACTCTTGATTGGGATGACCTGGTGGTTCCAAATGTTAATACCACTACCATACTTAATGGAGGCAATAAACCACTTTTGTATCAACAAGATCAAAGCATACTGAATGGCAGCTTAGGCGGTGTTGATTCCATGGACACTTTAGTCAAGGAAGGCTTGCAAAGTCAGGATAGTTTTGGAATGTGGATAAACAATGCCATATCTGATACATCATGCTCTGTAGATCAGCCAGCTCTTGAATCATCAATTCCTTCGTCTGTTCATGAACCATTTTCATCACTGGTGGTGGATAATCAGCAATCTTCTCTGCCAGAACAAGTATTTAATCTCACTGAGGTGTCCCCGGCATGGGCGTCTTCTACTGAGAAAACAAAGGTCCTGGTAACTGGATATTTTCATTATGGCTATCAACACCTTGCAAAGTCGAATCCAGTGTGTGTCTGTGGTGATGTAAGTTTTCCTGTAGAAATTGTTCAGGCTGGGGTTTACCGATGCTGGGTATCACCACATTCTCCTGGATTCGTAAATCTCTATATGAGCTTCGATGGCCATAAGCCCATTAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTATTTTGCATGATCCTACTGCTTCAATGGAAGAGAAATACAACTGGAATGAGTTCCAACTTCAGATGAGGCTTGCTCATTTGCTCTTTACAACACAGAAGAGCCTTGATCTTCTCTCTACTAAAGTATCACCTAATGCGCTGAAAGAGGCTAGAAGATTTGCCTTCAAAACATCTTTTATTTCCAAAAGTTGGCGATACTTGATGAAGTCAAGTGACGACAATACAACTCCATTTCCACAAGCAAAAGATACCTTGTTTGAAACTGCATTGAAAAACAAACTAAGGGAATGGCTTTTGGAACGAATTGTCTTAGGATGTAAGACTACTGAGTATGATGCACAAGGCCAAGGTGTAATTCATTTGTGTGCAGTTTTGGGATATAATTGGGCTATTTCCTTATATTCGTGGTCAGGTTTGTCACTGGATTTCCGTGACAAATTCGGATGGACGGCTCTTCATTGGGCGGCATATTGTGGAATGGAGAAAATGGTTGCAACTCTGTTGTCTTGTGGGGCAAGGCCCAACTTGGTCACAGATCCAACTCCACAAAATCCTGGTGGATGCACTGCTGCTGATCTTGCTTATATGAAGGGATATGATGGTTTAGCAGCTTATCTTTCAGAAAAGTCTCTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGCACACTGGAAACTACTACAACTGATCCAGTAAGTTCTGAGAACCTTACCGAGGACCAGCTGTACCTAAAGGATACATTGGCAGCTTACCGAACAGCGGCNGAGGCAGCAGCACGCATACAAGCTGCGTTTAGGGAGCACTCACTAAAATTGCAGTCTAACGCAATTCAGTTTAGCAGCCCAGAGGATGAAGCACGCCAAATAGTAGCAGCAATGAAGATTCAACATGCCTTTCGCAACTTTGAGACAAGGAAAACGACCGCAGCCGCTGCTCGGATCCAGCATAGATTCCGTACATGGAAGTTCCGTAGAGAATTTCTCCACATGCGACGTCAGGCTATTAAAATTCAAGCTGCATTCAGGGGCTTTCAAGTGCGTAGGCAATATCGTAAAATTATATGGTCTGTTGGAGTTCTTGAGAAAGCAATCCTGCGTTGGCGTTTAAAGAGAAAAGGTTTCCGCGGGCTCCAGGTGAATCCTGACCAAGAGATGGAAGAGGAGAAGCAGGAAAGTGATATAGAGGAGGACTTCTTTCGGACTAGTAGGAAACAAGCAGAAGAACGCATTGAGAGGTCTGTGGTACGTGTACAGGCCATGTTCCGTTCCAAGAAAGCACAGGAAGAGTATAGCAGGATGAAGCTGACACATAGTCAAGCAAAGCTGGAACTTGAATTAGAAGAAATCCTCAATTCTGAAGTTGACATGTTAACAACAAAGACATCATAGCTTTCCGAAAACANGGTTCCCATGAAAGGGAACATATATTCCGATGAAAGGAAAAAAGGGTGAAGGAGAAGGGGACTTGGAAAAGAATGCGACCAAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00161	115082	123332	+

Gene family

Gene family	subfamily
Transcription Factors Family	CAMTA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000161s00011256.1	PF03859.11	CG-1	31	146	8.40E-49
Glyur000161s00011256.1	PF00023.25	Ank	550	581	3.10E-08
Glyur000161s00011256.1	PF00612.22	IQ	715	733	0.2
Glyur000161s00011256.1	PF00612.22	IQ	738	757	0.00098

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.080
SRR1783600	control	15.241
SRR1783602	moderate drought stress	25.072
SRR1811619	moderate drought stress	24.735

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.908
DRR006520	Root Summer glycyrrhizin high producing strain	27.340
DRR006521	Root Winter glycyrrhizin high producing strain	35.834
DRR006522	Root Winter glycyrrhizin high producing strain	35.343
DRR006523	Root Summer glycyrrhizin low producing strain	26.810
DRR006524	Root Summer glycyrrhizin low producing strain	26.838
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.049
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.307

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.728
SRR2868004	Drought Stress (root)	44.233
SRR2967015	Control (root)	49.944

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.866
SRR9715740	Leaf	19.381
SRR9715741	Leaf	28.486
SRR9715739	Root	4.060
SRR9715742	Root	24.563
SRR9715743	Root	18.523

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.374
SRR8749028	MeJA induced 9h	14.146
SRR8749029	MeJA induced 9h	7.382
SRR8749030	Uninduced	10.540
SRR8749031	Uninduced	5.868
SRR8749032	Uninduced	5.043

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.668
SRR8400027	Control - Root	47.925