Gene detail

Gene detail information of Glyur000161s00011255

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G16920.1	3.00E-144	chitinase-like protein 2
NR	XP_003594792.1	0	Endochitinase [Medicago truncatula]
COG	YP_003125181.1	7.00E-31	chitinase [Chitinophaga pinensis DSM 2588]
Swissprot	tr\|Q9LSP9\|CTL2_ARATH	0	Chitinase-like protein 2 (Precursor)
trEMBL	tr\|G7IMU8\|G7IMU8_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK46708.1}

Sequence

Transcript Sequence

>Glyur000161s00011255.1
GGAAGCAAAAGCTCCACCAATTCCAACTCTGAAAAATCTCTTCCTCCTAACAAGTTACAAACTCACTTTCTATCCCTTTCACTCCACATCACACTCTCTCTCTAGAACCCTCTTTTTAAATGCCACAAATACCCTCCCACNCCACCTCTACCCCCCTCCAACCTCATTTGTTGAGACCACACAACACAACATAGGACTCAAGCACAAGGATGGATCATCCAAGATGGATTCTTCCATTGATCATCAGCATCATGGCAACGATTTTGGTGATTGTTGTCAATGCACAATCAGCAGTGAAGCCATTGGTGAAGACAGTGAAGGGGAAGAAGCTGTGTGACAAAGGGTGGGAATGCAAAGGGTGGTCTGTTTATTGTTGCAATGAGACCATCTCTGATTTCTTCGAGACATACCAGTTTGAGAACCTGTTCTCAAAGCGCAATGCACCAGTGGCACATGCTGTAGGCTTCTGGGACTACCGCTCTTTCATCACTGCTGCAGCACTTTACCAGCCTCTTGGGTTTGGCACCACTGGAGGAAAGATGGGTGGGATGAAGGAGGTTGCTGCTTTTTTTGGCCATGTGGGCAGCAAGACCTCTTGTGGTTATGGGGTGGCTACAGGGGGNCCCTTTGCCTGGGGCTTATGCTACAACAAGGAATTGAGTCCTGATAAATTCTACTGTGATGACTACTACAAACTAACCTATCCATGCAGTCCTGGGGCAGCATACTATGGCCGTGGNGCCATTCCAATCTACTGGAACTACAACTATGGAAAAACTGGGGAAGCCTTGAAGGTGGATCTGTTGAACCATCCAGAGTACATGGAACAGAATGCTACCCTGGCCTTCCAGGCAGCAATCTGGAAGTGGATGACCCCACCTGAGAAGCACATGCCTTCAGCCCATGATGTCTTTGTTGGCAACTGGAAACCCACCAAGAATGACACATTGTCCAAGAGGGTACCTGGATTTGGTGCCACAATCAATGTGCTATATGGGGACCAAGTGTGTGGCCAGGGTTCTGATAATGAGGCCATGAACAACGTCATTTCGCACTATCTCTATTACCTTGATCTTATGGGGATTGGTAGAGAAGAGGCAGGGCCTAATGAAGTGCTCTCTTGTGCTGAACAAGCTGCTTTTAAGCCCTCTGGCACACCCTCTTCTTCAACAACTTGAGAGCTTTTACTTGGTTTGGTTGTGATTTTATTCGGCCAGTTCATTCTTGTATCCTGCAAAAATCAAATAAAGGAGGGTAAGTGGGAAACGAGCTTTGGAGTGGACACTCATAAACGTGTATAGATTATTATGCAGCTGCTATATATATCGTTGGCTTTTGTTGTTTTCTTTTCCGGATTACTGTATAACTTGAATGTATTTTTGGCACAATGTATAAATTGAATATTTGATGATGATCATCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00161	109940	112270	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH19

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006032 chitin catabolic process

GO:0016998 cell wall macromolecule catabolic process

molecular_function
GO:0004568 chitinase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000161s00011255.1	PF00182.14	Glyco_hydro_19	67	293	2.30E-62

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.803
SRR1783600	control	30.590
SRR1783602	moderate drought stress	18.580
SRR1811619	moderate drought stress	18.344

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	55.683
DRR006520	Root Summer glycyrrhizin high producing strain	54.969
DRR006521	Root Winter glycyrrhizin high producing strain	0.864
DRR006522	Root Winter glycyrrhizin high producing strain	0.765
DRR006523	Root Summer glycyrrhizin low producing strain	58.258
DRR006524	Root Summer glycyrrhizin low producing strain	58.536
DRR006525	Leaf Summer glycyrrhizin high producing strain	55.582
DRR006526	Leaf Summer glycyrrhizin high producing strain	54.831

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	113.193
SRR2868004	Drought Stress (root)	98.138
SRR2967015	Control (root)	87.935

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	47.762
SRR9715740	Leaf	22.141
SRR9715741	Leaf	12.489
SRR9715739	Root	19.704
SRR9715742	Root	99.785
SRR9715743	Root	83.031

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.797
SRR8749028	MeJA induced 9h	3.786
SRR8749029	MeJA induced 9h	4.410
SRR8749030	Uninduced	0.311
SRR8749031	Uninduced	0.018
SRR8749032	Uninduced	0.377

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	148.733
SRR8400027	Control - Root	254.076