Gene detail

Gene detail information of Glyur000161s00011254

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G16910.1	acyl-activating enzyme 7
NR	XP_003609738.1	2-succinylbenzoate-CoA ligase [Medicago truncatula]
COG	YP_165932.1	AMP-binding protein [Ruegeria pomeroyi DSS-3]
Swissprot	tr\|Q8VZF1\|AEE7_ARATH	Acetate/butyrate--CoA ligase AAE7, peroxisomal
trEMBL	tr\|G7JMS0\|G7JMS0_MEDTR	Acetate/butyrate-CoA ligase AAE7, peroxisomal protein {ECO:0000313\|EMBL:AES91935.1}

Sequence

Transcript Sequence

>Glyur000161s00011254.1
AAAAAAATTAAAAACGAAACAAAAACAAAATAGGAATTCTCTACTGAGTAGTGAGTACTGATCACACCCATAATATTTAACAGCCGTTGGATCACCAAGACACGTACAACGACGCATTGTTTTTGTGTGCTACTATATAAAGACCAGGCCACCTCGTCGATCGTAGCACTCGTCATTCGTTTAAGTTTTTCTCTTCCATCACGAGCGAGCGGAAAGTCGGAAACTACAAACCAGAGACTTGAGAGAGTGTGTCTGAGTGAGGTGCAGGAGAATGGTGGTGGGGCGCGACATAGACGATTTGCCTAAGAACGAGGCGAACTACACTGCCTTAACGCCGCTGTGGTTCCTGGAAAGAGCAGCTCAGGTGCACCCCACCAGAATATCAGTGGTGCATGGATCACGGCAGTACACGTGGCACCAGACTTACCAGCGTTGCCGTCGATTCGCCTCCGCTCTTTCCAACCGTTCCATCGGTCCCGGCAACACTGTATCTATTATTGCACCCAATGTTCCAGCCCTTTATGAAGCTCATTTTGGAATTCCAATGGCAGGAGCTGNAGTGAACACTGTTAATATTCGGCTAAATGCACCGACAATAGCTTTCCTTCTTGGTCATTCATCAGCAGCAGTTGTAATCGTGGACCAAGAGTTCTTTTCCTTGGCAGAAGAGGCTTTGAAAATTTGGTCTGAGAAAAGCCAAAGCTTTAAGCCTCCAATTTTAATTGTCATTGGNGATGAAAACTGCAACCCAAATTCACTCAGACACGCTTTAGCCAAAGGAGCCATTGAATACGAGAAATTTCTTGAAAGTGGTGACCCTGAATATGCTTGGAAACCCCCAGAGGATGAGTGGCAGAGCATTGCTTTGGGTTACACATCTGGTACCACTGCTAGTCCTAAGGGTGTGTTGTTACACCACAGAGGGGCGTATCTCATGTCTCTAAGTGGAGCTCTTGTTTGGGGGATGAATGAAGGTGCTATATATCTGTGGACACTACCCATGTTCCATTGCAATGGCTGGTGCTATCCTTGGACACTTGCAGCTCTTTCCGGAACAAACATCTGTCTTCGGCAGGTAACAGCTAAGGCAGTATATGCAGCCATTGCCAAGTATAAAGTGACTCATTTTTGTGCAGCACCAGTGGTGCTTAACACAATAGTCAATGCCTCTTCTGAGGAAGCCATCCTTCCTCTACCTCATATTGTACATGTCAATACAGCCGGAGCAGCTCCTCCGCCATCTGTAATTGCCGCGATGTCTCGACTAGGATTTCNCGTCGCTCACACTTACGGTCTCTCAGAAACTTATGGCCCCTCCACCATATGCGCCTGGAAGCCAGAGTGGGAATCACTTCCCCCCGAAAAGCAAGCCAAGCTCAAAGCAAGGCAAGGGGTGAGGTACATTGCCTTGGAAGGCCTAGAAGTTATGAACACAAAAACCATGCAACCTGTTCCTNCTGATGGAACAACTGTTGGTGAGATTGTGATGCGGGGTAATGCCGTGATGAAAGGGTACTTAAAGAACCCGAAAGCTAACGCGGAGGCCTTTGCAAATGGATGGTATCATTCTGGTGATCTTGGTGTAAAGCATCCAGATGGATACATAGAAATTAAAGACAGGTCAAAGGACATCATCATCTCTGGTGCTGAGAATATCAGCAGTGTTGAAATAGAGAATGCTCTTTACTCTCACCCTGCAATACTGGAGGCATCAGTGGTTGCAAGGCCAGATGAGAAATGGGGTGAGTCTCCTTGTGCATTTGTTACACTGAAGCCTGGAGTGGATAGTAGTAATGAGCAGCGTTTGGCTGAGGATATANTTAAGTTCTGCAGGTCCAAAATGCCTGCTTATTGGGTCCCAAAATCGGTTGTGTTTGGGCCGTTGCCAAAAACAGCTACTGGGAAAACGCAGAAGCATTTGCTGAGGGCAAAGGCAAAGGAAATGGGGCCTGTTAGGATGAGCAAGTTGTAAGTTGTAACCATGTGTCATGTTACATAGACGACAATAAGGATAAAAAAACGCTGCTGATTGTTCCTAATGCTCTGTGATGTATGTGACTAGGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00161	103917	107610	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000161s00011254.1	PF00501.23	AMP-binding	27	457	6.10E-79
Glyur000161s00011254.1	PF13193.1	AMP-binding_C	466	545	6.60E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.232
SRR1783600	control	3.154
SRR1783602	moderate drought stress	3.839
SRR1811619	moderate drought stress	3.848

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.505
DRR006520	Root Summer glycyrrhizin high producing strain	4.422
DRR006521	Root Winter glycyrrhizin high producing strain	10.448
DRR006522	Root Winter glycyrrhizin high producing strain	10.208
DRR006523	Root Summer glycyrrhizin low producing strain	11.115
DRR006524	Root Summer glycyrrhizin low producing strain	11.103
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.187
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.254

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.270
SRR2868004	Drought Stress (root)	3.454
SRR2967015	Control (root)	5.854

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.913
SRR9715740	Leaf	1.437
SRR9715741	Leaf	1.900
SRR9715739	Root	8.369
SRR9715742	Root	5.181
SRR9715743	Root	4.302

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	115.126
SRR8749028	MeJA induced 9h	199.519
SRR8749029	MeJA induced 9h	389.916
SRR8749030	Uninduced	81.166
SRR8749031	Uninduced	48.463
SRR8749032	Uninduced	248.495

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.248
SRR8400027	Control - Root	5.553